Solyc08g082070.2 (Solanum lycopersicum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Solyc08g082070.2 T332695_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.463 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.463 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g082070.2.1 Sox 175 239
Solyc08g082070.2.1 Sox 292 359
Solyc08g082070.2.1 Sox 420 488

Links

Other Sox family TFs
Other Solanum lycopersicum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK28293.1 Cannabis sativa PK28293.1 N
evm.TU.supercontig_2.121 Carica papaya evm.TU.supercontig_2.121 N
Ciclev10015354m.g Citrus clementina Ciclev10015354m.g N
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N
Cucsa.026600 Cucumis sativus Cucsa.026600 N
Eucgr.G02067 Eucalyptus grandis Eucgr.G02067 N
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N
GLYMA08G09780 Glycine max GLYMA08G09780 N
GLYMA05G26790 Glycine max GLYMA05G26790 N
Gorai.012G183100 Gossypium raimondii Gorai.012G183100 N
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N
MDP0000320521 Malus domestica MDP0000320521 N
MDP0000826219 Malus domestica MDP0000826219 N
cassava39873.m1 Manihot esculenta cassava39873.m1 N
cassava18078.valid.m1 Manihot esculenta cassava18078.valid.m1 N
cassava18077.valid.m1 Manihot esculenta cassava18077.valid.m1 N
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N
POPTR_0008s13960 Populus trichocarpa POPTR_0008s13960 N
Pm005924 Prunus mume Pm005924 N
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N
29780.m001393 Ricinus communis 29780.m001393 N
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N
TCM_011212 Theobroma cacao TCM_011212 N