chr4.CM0025.190.nd (Lotus japonicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 chr4.CM0025.190.nd T335179_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.436 0.667
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.436 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0025.190.nd Sox 148 215
chr4.CM0025.190.nd Sox 264 330
chr4.CM0025.190.nd Sox 417 485

Links

Other Sox family TFs
Other Lotus japonicus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N 0.000
AMTR_s00033p00166000 Amborella trichopoda AMTR_s00033p00166000 N 0.000
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
Aquca_016_00081 Aquilegia coerulea Aquca_016_00081 N 0.000
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N 0.000
fgenesh2_kg.3__2996__AT2G12646.1 Arabidopsis lyrata fgenesh2_kg.3__2996__AT2G12646.1 N 0.000
scaffold_303520.1 Arabidopsis lyrata scaffold_303520.1 N 0.000
AT2G12646 Arabidopsis thaliana AT2G12646 N 0.000
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N 0.000
Bostr.22685s0001 Boechera stricta Bostr.22685s0001 N 0.000
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N 0.000
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N 0.000
BRADI3G06190 Brachypodium distachyon BRADI3G06190 N 0.000
Bo2g121040 Brassica oleracea Bo2g121040 N 0.000
Bo3g087070 Brassica oleracea Bo3g087070 N 0.000
Bo7g041160 Brassica oleracea Bo7g041160 N 0.000
Bo9g022400 Brassica oleracea Bo9g022400 N 0.000
Bra013149 Brassica rapa Bra013149 N 0.000
Bra014899 Brassica rapa Bra014899 N 0.000
Bra037203 Brassica rapa Bra037203 N 0.000
Bra038403 Brassica rapa Bra038403 N 0.000
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N 0.000
Cagra.2506s0001 Capsella grandiflora Cagra.2506s0001 N 0.000
Carubv10011663m.g Capsella rubella Carubv10011663m.g N 0.000
Carubv10015124m.g Capsella rubella Carubv10015124m.g N 0.000
evm.TU.supercontig_46.74 Carica papaya evm.TU.supercontig_46.74 N 0.000
Ca_06740 Cicer arietinum Ca_06740 N 0.000
Ciclev10010747m.g Citrus clementina Ciclev10010747m.g N 0.000
orange1.1g042361m.g Citrus sinensis orange1.1g042361m.g N 0.000
Cucsa.132770 Cucumis sativus Cucsa.132770 N 0.000
Eucgr.C00450 Eucalyptus grandis Eucgr.C00450 N 0.000
Eucgr.E04309 Eucalyptus grandis Eucgr.E04309 N 0.000
Thhalv10009789m.g Eutrema salsugineum Thhalv10009789m.g N 0.000
Thhalv10022828m.g Eutrema salsugineum Thhalv10022828m.g N 0.000
gene30812-v1.0-hybrid Fragaria vesca gene30812-v1.0-hybrid N 0.000
GLYMA09G05781 Glycine max GLYMA09G05781 N 0.000
GLYMA09G12330 Glycine max GLYMA09G12330 N 0.000
GLYMA13G23360 Glycine max GLYMA13G23360 N 0.000
GLYMA15G17040 Glycine max GLYMA15G17040 N 0.000
GLYMA15G23920 Glycine max GLYMA15G23920 N 0.000
GLYMA17G11470 Glycine max GLYMA17G11470 N 0.000
Gorai.004G110400 Gossypium raimondii Gorai.004G110400 N 0.000
Gorai.009G013500 Gossypium raimondii Gorai.009G013500 N 0.000
Gorai.010G057300 Gossypium raimondii Gorai.010G057300 N 0.000
MLOC_21744 Hordeum vulgare MLOC_21744 N 0.000
MLOC_37403 Hordeum vulgare MLOC_37403 N 0.000
LPERR02G05550 Leersia perrieri LPERR02G05550 N 0.000
LPERR06G19930 Leersia perrieri LPERR06G19930 N 0.000
Lus10008031.g Linum usitatissimum Lus10008031.g N 0.000
Lus10008814.g Linum usitatissimum Lus10008814.g N 0.000
Lus10039989.g Linum usitatissimum Lus10039989.g N 0.000
chr6.CM0037.1230.nd Lotus japonicus chr6.CM0037.1230.nd N 0.000
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N 0.000
MDP0000639526 Malus domestica MDP0000639526 N 0.000
cassava11490.m1 Manihot esculenta cassava11490.m1 N 0.000
cassava41034.m1 Manihot esculenta cassava41034.m1 N 0.000
cassava446.valid.m1 Manihot esculenta cassava446.valid.m1 N 0.000
MTR_4g116300 Medicago truncatula MTR_4g116300 N 0.000
mgf020898m Mimulus guttatus mgf020898m N 0.000
GSMUA_Achr1G09990_001 Musa acuminata GSMUA_Achr1G09990_001 N 0.000
GSMUA_Achr6G30690_001 Musa acuminata GSMUA_Achr6G30690_001 N 0.000
GSMUA_Achr6G35220_001 Musa acuminata GSMUA_Achr6G35220_001 N 0.000
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N 0.000
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N 0.000
GSMUA_Achr9G22490_001 Musa acuminata GSMUA_Achr9G22490_001 N 0.000
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N 0.000
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N 0.000
OBART02G05520 Oryza barthii OBART02G05520 N 0.000
OBART06G24000 Oryza barthii OBART06G24000 N 0.000
OB02G14750 Oryza brachyantha OB02G14750 N 0.000
OB02G15630 Oryza brachyantha OB02G15630 N 0.000
ORGLA02G0058300 Oryza glaberrima ORGLA02G0058300 N 0.000
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N 0.000
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N 0.000
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N 0.000
BGIOSGA007009 Oryza indica BGIOSGA007009 N 0.000
BGIOSGA007635 Oryza indica BGIOSGA007635 N 0.000
BGIOSGA023427 Oryza indica BGIOSGA023427 N 0.000
OLONG_011712 Oryza longistaminata OLONG_011712 N 0.000
OMERI06G23930 Oryza meridionalis OMERI06G23930 N 0.000
ONIVA02G05860 Oryza nivara ONIVA02G05860 N 0.000
ONIVA03G43780 Oryza nivara ONIVA03G43780 N 0.000
OPUNC02G04680 Oryza punctata OPUNC02G04680 N 0.000
OPUNC02G05490 Oryza punctata OPUNC02G05490 N 0.000
OPUNC06G21750 Oryza punctata OPUNC06G21750 N 0.000
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N 0.000
OS02G0172800 Oryza sativa OS02G0172800 N 0.000
OS02G0183000 Oryza sativa OS02G0183000 N 0.000
OS06G0666100 Oryza sativa OS06G0666100 N 0.000
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
Pavir.Ab00641 Panicum virgatum Pavir.Ab00641 N 0.000
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N 0.000
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N 0.000
Pavir.J35161 Panicum virgatum Pavir.J35161 N 0.000
PDK_20s1397531g003 Phoenix dactylifera PDK_20s1397531g003 N 0.000
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N 0.000
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N 0.000
POPTR_0006s05950 Populus trichocarpa POPTR_0006s05950 N 0.000
POPTR_0018s12380 Populus trichocarpa POPTR_0018s12380 N 0.000
Pm027672 Prunus mume Pm027672 N 0.000
PRUPE_ppa019806mg Prunus persica PRUPE_ppa019806mg N 0.000
29417.m000034 Ricinus communis 29417.m000034 N 0.000
30090.m000247 Ricinus communis 30090.m000247 N 0.000
SapurV1A.0306s0210 Salix purpurea SapurV1A.0306s0210 N 0.000
SapurV1A.2696s0020 Salix purpurea SapurV1A.2696s0020 N 0.000
Si018139m.g Setaria italica Si018139m.g N 0.000
Si019544m.g Setaria italica Si019544m.g N 0.000
Solyc07g007320.1 Solanum lycopersicum Solyc07g007320.1 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
Sb04g005680 Sorghum bicolor Sb04g005680 N 0.000
Sb10g026620 Sorghum bicolor Sb10g026620 N 0.000
TCM_005554 Theobroma cacao TCM_005554 N 0.000
TCM_038233 Theobroma cacao TCM_038233 N 0.000
Traes_6AS_3CC6C63F9 Triticum aestivum Traes_6AS_3CC6C63F9 N 0.000
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N 0.000
Traes_6BS_A7DE5BFD1 Triticum aestivum Traes_6BS_A7DE5BFD1 N 0.000
Traes_6DS_9C50DA0DE Triticum aestivum Traes_6DS_9C50DA0DE N 0.000
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N 0.000
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N 0.000
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N 0.000
TRIUR3_16881 Triticum urartu TRIUR3_16881 N 0.000
TRIUR3_33737 Triticum urartu TRIUR3_33737 N 0.000
VIT_11s0118g00600 Vitis vinifera VIT_11s0118g00600 N 0.000
GRMZM2G017882 Zea mays GRMZM2G017882 N 0.000
GRMZM2G070295 Zea mays GRMZM2G070295 N 0.000