PCF5 (Oryza indica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 BGIOSGA002128 T343700_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.983 1.000
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.943 0.481
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.941 0.473
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.937 0.466
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.937 0.466
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.937 0.466
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.893 0.412
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.886 0.374
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.878 0.389
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.878 0.389
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.872 0.336
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.868 0.351
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.866 0.374
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.866 0.374
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.832 0.336
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.832 0.336
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA002128-PA TCP 211 402

Links

Other TCP family TFs
Other Oryza indica TFs

433 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I
ASIL2 Arabidopsis thaliana AT3G14180 D
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I
Bo1g134590 Brassica oleracea Bo1g134590 I
PK22475.1 Cannabis sativa PK22475.1 N
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I
Carubv10015798m.g Capsella rubella Carubv10015798m.g I
Carubv10015321m.g Capsella rubella Carubv10015321m.g I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
Cla015773 Citrullus lanatus Cla015773 I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
GLYMA16G01370 Glycine max GLYMA16G01370 I
GLYMA07G04790 Glycine max GLYMA07G04790 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
MDP0000281471 Malus domestica MDP0000281471 I
MDP0000255104 Malus domestica MDP0000255104 I
MDP0000097759 Malus domestica MDP0000097759 N
cassava34877.m1 Manihot esculenta cassava34877.m1 I
cassava47424.m1 Manihot esculenta cassava47424.m1 I
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
mgf000047m Mimulus guttatus mgf000047m I
mgf006505m Mimulus guttatus mgf006505m I
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
Pm013209 Prunus mume Pm013209 I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
29727.m000472 Ricinus communis 29727.m000472 I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
TCM_029209 Theobroma cacao TCM_029209 I
TCM_042467 Theobroma cacao TCM_042467 N
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I