MDP0000202241 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000202241 T344921_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.925 0.794
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.921 0.762
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.921 0.762
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.920 0.762
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.920 0.762
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.883 0.746
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.877 0.746
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.874 0.635
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.826 0.587
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.826 0.587
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000202241 TCP 160 222

Links

Other TCP family TFs
Other Malus domestica TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.7__3225__AT5G41920.1 Arabidopsis lyrata fgenesh2_kg.7__3225__AT5G41920.1 N
SCL23 Arabidopsis thaliana AT5G41920 N
Bostr.25375s0003 Boechera stricta Bostr.25375s0003 N
Bo4g143710 Brassica oleracea Bo4g143710 N
Cagra.6263s0002 Capsella grandiflora Cagra.6263s0002 N
Carubv10004949m.g Capsella rubella Carubv10004949m.g N
Ca_11130 Cicer arietinum Ca_11130 N
Cla005525 Citrullus lanatus Cla005525 N
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N
Cucsa.180010 Cucumis sativus Cucsa.180010 N
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N
Thhalv10027784m.g Eutrema salsugineum Thhalv10027784m.g N
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N
GLYMA11G10220 Glycine max GLYMA11G10220 N
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N
Pm014866 Prunus mume Pm014866 N
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N
29872.m000537 Ricinus communis 29872.m000537 N
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N
TCM_002021 Theobroma cacao TCM_002021 N
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N