cassava8292.valid.m1 (Manihot esculenta)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 cassava8292.valid.m1 T355557_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAP1
M02726_2.00 		Arabidopsis thaliana
DRCKCGGTCAA
TTGACCGMGYH		 SELEX
Mathelier et al.(2014)
MA0589.1 		0.864 0.791
ZAP1
M11463_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_01 		0.864 0.791
WRKY3
M07381_2.00 		Arabidopsis thaliana
MAWAGTCAAMR
YKTTGACTWTK		 Dap-seq
OMalley et al.(2016)
WRKY3_col_a 		0.858 0.713
WRKY20
M07414_2.00 		Arabidopsis thaliana
HHHRGTCAAMGNH
DNCKTTGACYDDD		 Dap-seq
OMalley et al.(2016)
WRKY20_col_a 		0.857 0.783
WRKY2
M02567_2.00 		Arabidopsis thaliana
BRGTCAAM
KTTGACYV		 PBM
Weirauch et al.(2014)
pTH8832 		0.855 0.748
Q40090_IPOBA
M11466_2.00 		Ipomoea batatas Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPF1_Q2 		0.849 0.722
PK05432.1
M01324_2.00 		Cannabis sativa
NNRGTCARH
DYTGACYNN		 PBM
Lambert et al.(2019)
pTH11342 		0.844 0.730
WRKY33
M02554_2.00 		Arabidopsis thaliana
NNRGTCHDNN
NNHDGACYNN		 PBM
Weirauch et al.(2014)
pTH8183 		0.843 0.704
WRKY33
M07391_2.00 		Arabidopsis thaliana
HWWAGTCAAMD
HKTTGACTWWD		 Dap-seq
OMalley et al.(2016)
WRKY33_col_a 		0.843 0.704
WRKY26
M07418_2.00 		Arabidopsis thaliana
MWAAGTCAACGNH
DNCGTTGACTWWK		 Dap-seq
OMalley et al.(2016)
WRKY26_col_a 		0.841 0.670
WRKY26
M07419_2.00 		Arabidopsis thaliana
HMWAGTCAAMR
YKTTGACTWKD		 Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a 		0.841 0.670
WRKY25
M02552_2.00 		Arabidopsis thaliana
YRGTCAAM
KTTGACYR		 PBM
Weirauch et al.(2014)
pTH8810 		0.831 0.635
WRKY25
M07387_2.00 		Arabidopsis thaliana
HWWRGTCAAMR
YKTTGACYWWD		 Dap-seq
OMalley et al.(2016)
WRKY25_col_a 		0.831 0.635
WRKY25
M07388_2.00 		Arabidopsis thaliana
NNNHWRGTCAACRNH
DNYGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a 		0.831 0.635
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava8292.valid.m1 WRKY 61 117
cassava8292.valid.m1 WRKY 207 264

Links

Other WRKY family TFs
Other Manihot esculenta TFs

777 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I
ERF027 Arabidopsis thaliana AT1G12630 D
AT1G63040 Arabidopsis thaliana AT1G63040 D
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I
Bo8g064940 Brassica oleracea Bo8g064940 I
Bo9g036590 Brassica oleracea Bo9g036590 I
Bo9g028820 Brassica oleracea Bo9g028820 I
Bra027615 Brassica rapa Bra027615 I
Bra027616 Brassica rapa Bra027616 I
Bra016761 Brassica rapa Bra016761 I
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I
Carubv10022214m.g Capsella rubella Carubv10022214m.g I
Carubv10012147m.g Capsella rubella Carubv10012147m.g I
Cla004491 Citrullus lanatus Cla004491 I
Cla011673 Citrullus lanatus Cla011673 I
Ciclev10023840m.g Citrus clementina Ciclev10023840m.g I
Cucsa.302760 Cucumis sativus Cucsa.302760 I
Eucgr.D01924 Eucalyptus grandis Eucgr.D01924 I
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I
GLYMA10G38420 Glycine max GLYMA10G38420 I
Gorai.008G243700 Gossypium raimondii Gorai.008G243700 N
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I
LPERR02G22600 Leersia perrieri LPERR02G22600 I
MDP0000262710 Malus domestica MDP0000262710 I
MDP0000189347 Malus domestica MDP0000189347 I
OBART02G27750 Oryza barthii OBART02G27750 I
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I
BGIOSGA008802 Oryza indica BGIOSGA008802 I
OMERI02G26970 Oryza meridionalis OMERI02G26970 I
ONIVA02G30630 Oryza nivara ONIVA02G30630 I
OPUNC02G25450 Oryza punctata OPUNC02G25450 I
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I
OS02G0676800 Oryza sativa OS02G0676800 I
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I
POPTR_0001s08740 Populus trichocarpa POPTR_0001s08740 N
Pm023766 Prunus mume Pm023766 I
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I
30147.m014311 Ricinus communis 30147.m014311 I
SapurV1A.0282s0060 Salix purpurea SapurV1A.0282s0060 N
Si018039m.g Setaria italica Si018039m.g I
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I
Sb04g031960 Sorghum bicolor Sb04g031960 I
VIT_02s0025g04440 Vitis vinifera VIT_02s0025g04440 N
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I
GRMZM2G000520 Zea mays GRMZM2G000520 I