OB04G25990 (Oryza brachyantha)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 OB04G25990 T019917_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB04G25990.1 B3 97 198

Links

Other B3 family TFs
Other Oryza brachyantha TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF10 Oryza indica BGIOSGA016767 I 0.866
OBART04G18910 Oryza barthii OBART04G18910 I 0.866
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.866
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.866
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.866
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.866
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.866
OS04G0519700 Oryza sativa OS04G0519700 I 0.866
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.859
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.835
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.802
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.802
Bra011162 Brassica rapa Bra011162 I 0.794
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.792
OLONG_014659 Oryza longistaminata OLONG_014659 N 0.785
ARF16 Arabidopsis thaliana AT4G30080 D 0.784
Bo1g014600 Brassica oleracea Bo1g014600 I 0.784
Bo7g114200 Brassica oleracea Bo7g114200 I 0.784
Bra024109 Brassica rapa Bra024109 I 0.784
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.784
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.784
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.784
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.784
TCM_043157 Theobroma cacao TCM_043157 I 0.784
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.784
Pm018533 Prunus mume Pm018533 I 0.784
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.784
mgf005300m Mimulus guttatus mgf005300m I 0.784
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.784
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.784
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.784
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.784
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.784
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.784
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.784
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.784
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.784
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.784
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.784
F775_32978 Aegilops tauschii F775_32978 I 0.781
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.776
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.773
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.773
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.773
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.773
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.773
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.773
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.773
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.773
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.773
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.773
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.773
Si009541m.g Setaria italica Si009541m.g I 0.773
Si034525m.g Setaria italica Si034525m.g I 0.773
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.773
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.773
Ca_17136 Cicer arietinum Ca_17136 I 0.773
Cla018574 Citrullus lanatus Cla018574 I 0.773
Pm030120 Prunus mume Pm030120 I 0.773
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.773
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.773
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.773
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.773
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.773
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.773
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.773
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.773
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.773
PK17007.1 Cannabis sativa PK17007.1 I 0.773
Ca_02541 Cicer arietinum Ca_02541 I 0.771
27494.m000045 Ricinus communis 27494.m000045 I 0.771
27538.m000327 Ricinus communis 27538.m000327 I 0.771
mgf016139m Mimulus guttatus mgf016139m I 0.771
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.768
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.763
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.763
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.763
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.763
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.763
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.763
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.763
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.763
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.763
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.763
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.763
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.763
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.763
OB06G32920 Oryza brachyantha OB06G32920 I 0.763
OB10G20590 Oryza brachyantha OB10G20590 I 0.763
OBART06G25230 Oryza barthii OBART06G25230 I 0.763
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.763
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.763
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.763
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.763
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.763
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.763
ARF18 Oryza sativa OS06G0685700 I 0.763
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.763
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.763
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.763
Si005991m.g Setaria italica Si005991m.g I 0.763
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.763
TCM_022163 Theobroma cacao TCM_022163 I 0.763
TCM_042067 Theobroma cacao TCM_042067 I 0.763
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.763
Ca_26121 Cicer arietinum Ca_26121 I 0.763
Pm031275 Prunus mume Pm031275 I 0.763
30078.m002329 Ricinus communis 30078.m002329 I 0.763
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.763
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.763
mgf024607m Mimulus guttatus mgf024607m I 0.763
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.763
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.763
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.763
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.763
MDP0000131481 Malus domestica MDP0000131481 I 0.763
MDP0000221322 Malus domestica MDP0000221322 I 0.763
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.763
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.763
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.763
ARF10 Arabidopsis thaliana AT2G28350 I 0.760
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.760
Bo4g071620 Brassica oleracea Bo4g071620 I 0.760
Bra011955 Brassica rapa Bra011955 I 0.760
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.760
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.760
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.760
OB02G32150 Oryza brachyantha OB02G32150 I 0.760
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.760
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.760
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.760
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.760
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.760
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.760
ARF8 Oryza sativa OS02G0628600 I 0.760
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.760
Si016509m.g Setaria italica Si016509m.g I 0.760
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.760
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.760
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.760
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.760
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.760
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.760
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.760
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.753
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.753
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.753
OBART10G13410 Oryza barthii OBART10G13410 I 0.753
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.753
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.753
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.753
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.753
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.753
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.753
ARF22 Oryza sativa OS10G0479900 I 0.753
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.753
Cla013979 Citrullus lanatus Cla013979 I 0.753
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.753
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.753
MDP0000750392 Malus domestica MDP0000750392 I 0.753
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.753
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.753
PK13064.1 Cannabis sativa PK13064.1 I 0.753
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.750
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.750
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.750
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.750
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.750
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.750
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.742
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.742
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.742
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.742
Cla008883 Citrullus lanatus Cla008883 I 0.742
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.742
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.742
mgf000336m Mimulus guttatus mgf000336m I 0.742
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.742
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.742
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.742
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.732
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.732
Ca_08488 Cicer arietinum Ca_08488 I 0.725
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.725
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.722
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.722
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.719
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.719
PK13393.1 Cannabis sativa PK13393.1 I 0.714
MTR_0041s0120 Medicago truncatula MTR_0041s0120 I 0.713
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.708
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.708
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.701