cassava16550.m1 (Manihot esculenta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 cassava16550.m1 T047957_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07858.1
M01123_2.00 		Cannabis sativa
HCACGTGB
VCACGTGD		 PBM
Lambert et al.(2019)
pTH11370 		0.914 1.000
PK20225.1
M01128_2.00 		Cannabis sativa
NCACGTGVN
NBCACGTGN		 PBM
Lambert et al.(2019)
pTH11274 		0.852 0.720
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16550.m1 bHLH 123 172

Links

Other bHLH family TFs
Other Manihot esculenta TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA10G34910 Glycine max GLYMA10G34910 I 0.914
GLYMA20G32660 Glycine max GLYMA20G32660 I 0.914
MTR_1g093750 Medicago truncatula MTR_1g093750 I 0.914
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I 0.914
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I 0.914
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I 0.914
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I 0.914
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I 0.914
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I 0.914
TCM_011873 Theobroma cacao TCM_011873 I 0.914
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I 0.914
Ca_08440 Cicer arietinum Ca_08440 I 0.914
Cla020671 Citrullus lanatus Cla020671 I 0.914
Pm029004 Prunus mume Pm029004 I 0.914
29738.m001043 Ricinus communis 29738.m001043 I 0.914
cassava46299.m1 Manihot esculenta cassava46299.m1 I 0.914
Cucsa.283920 Cucumis sativus Cucsa.283920 I 0.914
mgf017635m Mimulus guttatus mgf017635m I 0.914
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I 0.914
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I 0.914
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I 0.914
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I 0.914
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I 0.914
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I 0.914
Lus10021711.g Linum usitatissimum Lus10021711.g I 0.914
Lus10035056.g Linum usitatissimum Lus10035056.g I 0.914
MDP0000271420 Malus domestica MDP0000271420 I 0.914
MDP0000319726 Malus domestica MDP0000319726 I 0.914
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I 0.914
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I 0.914
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I 0.914
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I 0.914
PK07858.1 Cannabis sativa PK07858.1 D 0.914
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I 0.894
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.894
BHLH30 Arabidopsis thaliana AT1G68810 I 0.884
Bo6g108270 Brassica oleracea Bo6g108270 I 0.884
Bra004015 Brassica rapa Bra004015 I 0.884
Bra004338 Brassica rapa Bra004338 I 0.884
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I 0.884
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.884
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.884
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.884
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.884
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.884
Ca_24775 Cicer arietinum Ca_24775 I 0.884
Cla000223 Citrullus lanatus Cla000223 I 0.884
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.884
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.884
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.884
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.884
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.884
AMTR_s00101p00150740 Amborella trichopoda AMTR_s00101p00150740 I 0.869
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.864
BHLH32 Arabidopsis thaliana AT3G25710 I 0.864
Bo2g138630 Brassica oleracea Bo2g138630 I 0.864
Bo7g081980 Brassica oleracea Bo7g081980 I 0.864
Bra025158 Brassica rapa Bra025158 I 0.864
Bra026510 Brassica rapa Bra026510 I 0.864
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.864
F775_10096 Aegilops tauschii F775_10096 I 0.864
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.864
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.864
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.864
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.864
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.864
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.864
OB03G21490 Oryza brachyantha OB03G21490 I 0.864
OBART03G11320 Oryza barthii OBART03G11320 I 0.864
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.864
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.864
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.864
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.864
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.864
OS03G0260600 Oryza sativa OS03G0260600 I 0.864
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.864
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.864
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.864
Si039730m.g Setaria italica Si039730m.g I 0.864
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.864
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.864
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.864
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.864
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.864
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.864
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.864
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.864
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.864
Bo6g095860 Brassica oleracea Bo6g095860 I 0.860
BRADI3G54070 Brachypodium distachyon BRADI3G54070 I 0.853
Traes_6BL_AEB13ECDE Triticum aestivum Traes_6BL_AEB13ECDE I 0.853
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.852
GLYMA02G15780 Glycine max GLYMA02G15780 I 0.852
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.852
GSMUA_Achr7G10740_001 Musa acuminata GSMUA_Achr7G10740_001 I 0.852
MTR_4g087920 Medicago truncatula MTR_4g087920 I 0.852
Ca_06386 Cicer arietinum Ca_06386 I 0.852
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.852
PK20225.1 Cannabis sativa PK20225.1 D 0.852
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.849
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.842
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.842
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.841
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.840
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.840
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.840
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.840
GRMZM2G526668 Zea mays GRMZM2G526668 I 0.840
LPERR08G12910 Leersia perrieri LPERR08G12910 I 0.840
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.840
OBART08G15650 Oryza barthii OBART08G15650 I 0.840
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.840
OMERI08G12930 Oryza meridionalis OMERI08G12930 I 0.840
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.840
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.840
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.840
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.840
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.840
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.840
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.840
OS08G0432800 Oryza sativa OS08G0432800 I 0.840
OS09G0410700 Oryza sativa OS09G0410700 I 0.840
Sb07g021170 Sorghum bicolor Sb07g021170 I 0.840
Si013911m.g Setaria italica Si013911m.g I 0.840
Lus10034271.g Linum usitatissimum Lus10034271.g I 0.840
Lus10041493.g Linum usitatissimum Lus10041493.g I 0.840
F775_11347 Aegilops tauschii F775_11347 I 0.839
F775_14190 Aegilops tauschii F775_14190 I 0.839