Bra035604 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra035604 T268103_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB80
M07142_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MS188_col_a 		0.892 0.989
MYB80
M07143_2.00 		Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR		 Dap-seq
OMalley et al.(2016)
MS188_colamp_a 		0.892 0.989
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035604.1-P Myb 14 61
Bra035604.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_2049 Arabidopsis lyrata Al_scaffold_0008_2049 I 0.892
Carubv10027619m.g Capsella rubella Carubv10027619m.g I 0.892
Cagra.3745s0008 Capsella grandiflora Cagra.3745s0008 I 0.892
Thhalv10015622m.g Eutrema salsugineum Thhalv10015622m.g I 0.892
MYB80 Arabidopsis thaliana AT5G56110 D 0.892
Bra002847 Brassica rapa Bra002847 I 0.892
Bo2g036530 Brassica oleracea Bo2g036530 I 0.889
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001268 I 0.888
Bostr.26833s0652 Boechera stricta Bostr.26833s0652 I 0.883
Bo9g123440 Brassica oleracea Bo9g123440 I 0.881
evm.TU.supercontig_12.83 Carica papaya evm.TU.supercontig_12.83 I 0.874
POPTR_0011s17060 Populus trichocarpa POPTR_0011s17060 I 0.858
AtMYB103 Vitis vinifera VIT_19s0015g01280 I 0.849
PRUPE_ppa021719mg Prunus persica PRUPE_ppa021719mg I 0.849
Cucsa.041880 Cucumis sativus Cucsa.041880 I 0.849
Ca_17657 Cicer arietinum Ca_17657 I 0.849
cassava33918.m1 Manihot esculenta cassava33918.m1 I 0.849
GLYMA18G07960 Glycine max GLYMA18G07960 I 0.849
Gorai.009G454000 Gossypium raimondii Gorai.009G454000 I 0.849
gene01457-v1.0-hybrid Fragaria vesca gene01457-v1.0-hybrid I 0.843
LPERR04G12420 Leersia perrieri LPERR04G12420 I 0.840
Cla004524 Citrullus lanatus Cla004524 I 0.839
Ciclev10008921m.g Citrus clementina Ciclev10008921m.g I 0.836
MTR_3g461490 Medicago truncatula MTR_3g461490 I 0.834
TCM_030529 Theobroma cacao TCM_030529 I 0.832
SapurV1A.0338s0180 Salix purpurea SapurV1A.0338s0180 I 0.832
Sb06g019650 Sorghum bicolor Sb06g019650 I 0.831
TRIUR3_35325 Triticum urartu TRIUR3_35325 I 0.831
Traes_2BL_361925B62 Triticum aestivum Traes_2BL_361925B62 I 0.831
Pavir.Ga01401 Panicum virgatum Pavir.Ga01401 I 0.831
Si012130m.g Setaria italica Si012130m.g I 0.831
ONIVA04G13800 Oryza nivara ONIVA04G13800 I 0.831
GRMZM2G173633 Zea mays GRMZM2G173633 I 0.831
OB04G23000 Oryza brachyantha OB04G23000 I 0.831
OGLUM04G15520 Oryza glumaepatula OGLUM04G15520 I 0.831
OPUNC04G13560 Oryza punctata OPUNC04G13560 I 0.831
ORGLA04G0126700 Oryza glaberrima ORGLA04G0126700 I 0.831
BGIOSGA014912 Oryza indica BGIOSGA014912 I 0.831
F775_22620 Aegilops tauschii F775_22620 I 0.831
ORUFI04G17000 Oryza rufipogon ORUFI04G17000 I 0.831
OMERI04G13500 Oryza meridionalis OMERI04G13500 I 0.831
POPTR_0001s47430 Populus trichocarpa POPTR_0001s47430 I 0.830
Eucgr.F03656 Eucalyptus grandis Eucgr.F03656 I 0.819
Aquca_005_00315 Aquilegia coerulea Aquca_005_00315 I 0.817
PGSC0003DMG400008687 Solanum tuberosum PGSC0003DMG400008687 I 0.814
Solyc10g005760.1 Solanum lycopersicum Solyc10g005760.1 I 0.814
SapurV1A.0395s0050 Salix purpurea SapurV1A.0395s0050 I 0.812
BGIOSGA030830 Oryza indica BGIOSGA030830 I 0.811
BRADI5G13041 Brachypodium distachyon BRADI5G13041 I 0.809
Traes_2DL_A03AB7608 Triticum aestivum Traes_2DL_A03AB7608 I 0.786
Pavir.J28142 Panicum virgatum Pavir.J28142 I 0.715
PGSC0003DMG400021401 Solanum tuberosum PGSC0003DMG400021401 I 0.684
Solyc02g091980.1 Solanum lycopersicum Solyc02g091980.1 I 0.684
Lus10026543.g Linum usitatissimum Lus10026543.g I 0.682
Lus10011606.g Linum usitatissimum Lus10011606.g I 0.682
Lus10013830.g Linum usitatissimum Lus10013830.g I 0.682
Pavir.J07059 Panicum virgatum Pavir.J07059 I 0.678
Gorai.006G162800 Gossypium raimondii Gorai.006G162800 I 0.678
MTR_4g097570 Medicago truncatula MTR_4g097570 I 0.675
GRMZM2G104789 Zea mays GRMZM2G104789 I 0.673
GLYMA19G36830 Glycine max GLYMA19G36830 I 0.671
PGSC0003DMG400004948 Solanum tuberosum PGSC0003DMG400004948 I 0.671
Solyc04g077260.2 Solanum lycopersicum Solyc04g077260.2 I 0.671
MDP0000262514 Malus domestica MDP0000262514 I 0.667
MDP0000786507 Malus domestica MDP0000786507 I 0.667
MDP0000124992 Malus domestica MDP0000124992 I 0.667
PRUPE_ppa024417mg Prunus persica PRUPE_ppa024417mg I 0.667
GSMUA_Achr6G31740_001 Musa acuminata GSMUA_Achr6G31740_001 I 0.666
GSMUA_Achr5G01930_001 Musa acuminata GSMUA_Achr5G01930_001 I 0.666
GLYMA03G34110 Glycine max GLYMA03G34110 I 0.664
MTR_4g057635 Medicago truncatula MTR_4g057635 I 0.662
Ca_17470 Cicer arietinum Ca_17470 I 0.662
LjSGA_028088.1 Lotus japonicus LjSGA_028088.1 I 0.662
Pm026353 Prunus mume Pm026353 I 0.662
GLYMA12G30140 Glycine max GLYMA12G30140 I 0.662
Lus10001394.g Linum usitatissimum Lus10001394.g I 0.662
GLYMA11G19980 Glycine max GLYMA11G19980 I 0.662
GLYMA12G08480 Glycine max GLYMA12G08480 I 0.662
Lus10023002.g Linum usitatissimum Lus10023002.g I 0.662