Cla004524 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla004524 T283159_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB80
M07142_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MS188_col_a 		0.821 0.903
MYB80
M07143_2.00 		Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR		 Dap-seq
OMalley et al.(2016)
MS188_colamp_a 		0.821 0.903
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.661 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla004524 Myb 14 61
Cla004524 Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA18G07960 Glycine max GLYMA18G07960 I 0.898
PRUPE_ppa021719mg Prunus persica PRUPE_ppa021719mg I 0.898
AtMYB103 Vitis vinifera VIT_19s0015g01280 I 0.898
Ca_17657 Cicer arietinum Ca_17657 I 0.898
cassava33918.m1 Manihot esculenta cassava33918.m1 I 0.898
Cucsa.041880 Cucumis sativus Cucsa.041880 I 0.898
Gorai.009G454000 Gossypium raimondii Gorai.009G454000 I 0.898
gene01457-v1.0-hybrid Fragaria vesca gene01457-v1.0-hybrid I 0.892
POPTR_0011s17060 Populus trichocarpa POPTR_0011s17060 I 0.889
Ciclev10008921m.g Citrus clementina Ciclev10008921m.g I 0.884
MTR_3g461490 Medicago truncatula MTR_3g461490 I 0.883
TCM_030529 Theobroma cacao TCM_030529 I 0.881
POPTR_0001s47430 Populus trichocarpa POPTR_0001s47430 I 0.879
BGIOSGA014912 Oryza indica BGIOSGA014912 I 0.877
F775_22620 Aegilops tauschii F775_22620 I 0.877
GRMZM2G173633 Zea mays GRMZM2G173633 I 0.877
OB04G23000 Oryza brachyantha OB04G23000 I 0.877
OGLUM04G15520 Oryza glumaepatula OGLUM04G15520 I 0.877
OMERI04G13500 Oryza meridionalis OMERI04G13500 I 0.877
ONIVA04G13800 Oryza nivara ONIVA04G13800 I 0.877
OPUNC04G13560 Oryza punctata OPUNC04G13560 I 0.877
ORGLA04G0126700 Oryza glaberrima ORGLA04G0126700 I 0.877
ORUFI04G17000 Oryza rufipogon ORUFI04G17000 I 0.877
Sb06g019650 Sorghum bicolor Sb06g019650 I 0.877
Si012130m.g Setaria italica Si012130m.g I 0.877
Traes_2BL_361925B62 Triticum aestivum Traes_2BL_361925B62 I 0.877
TRIUR3_35325 Triticum urartu TRIUR3_35325 I 0.877
Pavir.Ga01401 Panicum virgatum Pavir.Ga01401 I 0.877
evm.TU.supercontig_12.83 Carica papaya evm.TU.supercontig_12.83 I 0.874
LPERR04G12420 Leersia perrieri LPERR04G12420 I 0.868
Aquca_005_00315 Aquilegia coerulea Aquca_005_00315 I 0.866
PGSC0003DMG400008687 Solanum tuberosum PGSC0003DMG400008687 I 0.863
Solyc10g005760.1 Solanum lycopersicum Solyc10g005760.1 I 0.863
SapurV1A.0395s0050 Salix purpurea SapurV1A.0395s0050 I 0.861
Eucgr.F03656 Eucalyptus grandis Eucgr.F03656 I 0.858
BGIOSGA030830 Oryza indica BGIOSGA030830 I 0.857
SapurV1A.0338s0180 Salix purpurea SapurV1A.0338s0180 I 0.857
BRADI5G13041 Brachypodium distachyon BRADI5G13041 I 0.855
Bra035604 Brassica rapa Bra035604 I 0.839
Traes_2DL_A03AB7608 Triticum aestivum Traes_2DL_A03AB7608 I 0.832
Bostr.26833s0652 Boechera stricta Bostr.26833s0652 I 0.830
Al_scaffold_0008_2049 Arabidopsis lyrata Al_scaffold_0008_2049 I 0.821
MYB80 Arabidopsis thaliana AT5G56110 D 0.821
Bra002847 Brassica rapa Bra002847 I 0.821
Cagra.3745s0008 Capsella grandiflora Cagra.3745s0008 I 0.821
Carubv10027619m.g Capsella rubella Carubv10027619m.g I 0.821
Thhalv10015622m.g Eutrema salsugineum Thhalv10015622m.g I 0.821
Bo2g036530 Brassica oleracea Bo2g036530 I 0.819
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001268 I 0.817
Bo9g123440 Brassica oleracea Bo9g123440 I 0.811
Pavir.J28142 Panicum virgatum Pavir.J28142 I 0.772
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.691
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.691
Lus10013830.g Linum usitatissimum Lus10013830.g I 0.687
Lus10026543.g Linum usitatissimum Lus10026543.g I 0.687
Bo1g051220 Brassica oleracea Bo1g051220 I 0.683
Bra026281 Brassica rapa Bra026281 I 0.683
Gorai.006G162800 Gossypium raimondii Gorai.006G162800 I 0.683
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.683
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.682
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.682
Cla007838 Citrullus lanatus Cla007838 I 0.682
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.682
GRMZM2G104789 Zea mays GRMZM2G104789 I 0.679
Lus10011606.g Linum usitatissimum Lus10011606.g I 0.679
GLYMA19G36830 Glycine max GLYMA19G36830 I 0.677
Cla019747 Citrullus lanatus Cla019747 I 0.677
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.677
GSMUA_Achr5G01930_001 Musa acuminata GSMUA_Achr5G01930_001 I 0.672
GLYMA03G34110 Glycine max GLYMA03G34110 I 0.670
MLOC_44167 Hordeum vulgare MLOC_44167 I 0.668
PGSC0003DMG400021401 Solanum tuberosum PGSC0003DMG400021401 I 0.668
Solyc02g091980.1 Solanum lycopersicum Solyc02g091980.1 I 0.668
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I 0.668
Bo7g111870 Brassica oleracea Bo7g111870 I 0.666
Bra024224 Brassica rapa Bra024224 I 0.666
GLYMA01G40411 Glycine max GLYMA01G40411 I 0.666
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I 0.666
POPTR_0011s04000 Populus trichocarpa POPTR_0011s04000 N 0.666
Aquca_001_00247 Aquilegia coerulea Aquca_001_00247 I 0.666
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.666
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.666
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.666
Gorai.009G006700 Gossypium raimondii Gorai.009G006700 I 0.666
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.666
GSMUA_Achr6G01850_001 Musa acuminata GSMUA_Achr6G01850_001 I 0.665
OB03G42660 Oryza brachyantha OB03G42660 I 0.665
estExt_Genewise1.C_360117 Physcomitrella patens estExt_Genewise1.C_360117 N 0.665
gw1.65.181.1 Physcomitrella patens gw1.65.181.1 N 0.665
Bo1g024170 Brassica oleracea Bo1g024170 I 0.664
Bra013526 Brassica rapa Bra013526 I 0.664
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.663
BGIOSGA009746 Oryza indica BGIOSGA009746 I 0.662
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.662
GLYMA04G05170 Glycine max GLYMA04G05170 I 0.662
GLYMA06G05260 Glycine max GLYMA06G05260 I 0.662
GLYMA11G04880 Glycine max GLYMA11G04880 I 0.662
LPERR03G29970 Leersia perrieri LPERR03G29970 I 0.662
MTR_1g017140 Medicago truncatula MTR_1g017140 I 0.662
MTR_5g014990 Medicago truncatula MTR_5g014990 I 0.662
OBART03G35660 Oryza barthii OBART03G35660 I 0.662
OGLUM03G35410 Oryza glumaepatula OGLUM03G35410 I 0.662
OLONG_025560 Oryza longistaminata OLONG_025560 I 0.662
OMERI03G32880 Oryza meridionalis OMERI03G32880 I 0.662
ONIVA03G37150 Oryza nivara ONIVA03G37150 I 0.662
ORGLA03G0327000 Oryza glaberrima ORGLA03G0327000 I 0.662
ORUFI03G37090 Oryza rufipogon ORUFI03G37090 I 0.662
OS03G0771100 Oryza sativa OS03G0771100 I 0.662
POPTR_0002s11440 Populus trichocarpa POPTR_0002s11440 I 0.662
POPTR_0018s10390 Populus trichocarpa POPTR_0018s10390 I 0.662
Sb01g006800 Sorghum bicolor Sb01g006800 I 0.662
Si036681m.g Setaria italica Si036681m.g I 0.662
TCM_034634 Theobroma cacao TCM_034634 I 0.662
MYB36 Vitis vinifera VIT_11s0052g01490 I 0.662
VIT_18s0001g08470 Vitis vinifera VIT_18s0001g08470 I 0.662
Ca_02249 Cicer arietinum Ca_02249 I 0.662
Ca_09203 Cicer arietinum Ca_09203 I 0.662
Cla014272 Citrullus lanatus Cla014272 I 0.662
Cla021213 Citrullus lanatus Cla021213 I 0.662
cassava25562.m1 Manihot esculenta cassava25562.m1 I 0.662
cassava46793.m1 Manihot esculenta cassava46793.m1 I 0.662
Cucsa.103470 Cucumis sativus Cucsa.103470 I 0.662
Cucsa.353120 Cucumis sativus Cucsa.353120 I 0.662
Ciclev10027178m.g Citrus clementina Ciclev10027178m.g I 0.662
Gorai.009G222900 Gossypium raimondii Gorai.009G222900 I 0.662
Lus10007248.g Linum usitatissimum Lus10007248.g I 0.662
Lus10028248.g Linum usitatissimum Lus10028248.g I 0.662
orange1.1g036344m.g Citrus sinensis orange1.1g036344m.g I 0.662
Pavir.Ia00427 Panicum virgatum Pavir.Ia00427 I 0.662
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I 0.662
SapurV1A.0271s0250 Salix purpurea SapurV1A.0271s0250 I 0.662
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.661
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.661