PK12959.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK12959.1 T290399_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.785 0.892
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.703 0.753
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.686 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK12959.1 Myb 59 105
PK12959.1 Myb 111 156

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.860
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.857
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.856
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.847
27798.m000612 Ricinus communis 27798.m000612 I 0.847
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.831
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.830
Cla018417 Citrullus lanatus Cla018417 I 0.830
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.830
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.830
TCM_042629 Theobroma cacao TCM_042629 I 0.829
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.829
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.827
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.827
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.813
Pm018862 Prunus mume Pm018862 I 0.808
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.807
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.806
Pm002576 Prunus mume Pm002576 I 0.803
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.803
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.802
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.798
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.798
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.795
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.795
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.794
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.794
TCM_021796 Theobroma cacao TCM_021796 I 0.794
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.792
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.791
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.789
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.789
mgf015566m Mimulus guttatus mgf015566m I 0.787
Si001686m.g Setaria italica Si001686m.g I 0.785
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.785
PK07741.1 Cannabis sativa PK07741.1 D 0.785
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.784
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.783
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.777
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.775
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.773
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.773
MDP0000284922 Malus domestica MDP0000284922 I 0.771
mgf018580m Mimulus guttatus mgf018580m I 0.766
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.766
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.766
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.766
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.765
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.764
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.764
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.764
MDP0000478512 Malus domestica MDP0000478512 I 0.761
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.755
MDP0000807341 Malus domestica MDP0000807341 I 0.754
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.754
MDP0000203733 Malus domestica MDP0000203733 I 0.752
MDP0000319124 Malus domestica MDP0000319124 I 0.752
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.750
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.748
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.748
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.747
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.745
Bra007186 Brassica rapa Bra007186 I 0.740
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.739
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.739
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.739
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.737
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.737
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.734
OBART01G37390 Oryza barthii OBART01G37390 I 0.734
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.734
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.734
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.734
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.734
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.734
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.734
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.734
OS01G0850400 Oryza sativa OS01G0850400 I 0.734
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.734
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.734
Bo8g090160 Brassica oleracea Bo8g090160 I 0.731
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.731
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.731
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.727
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.724
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.723
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.721
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.719
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.715
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.715
PK16550.1 Cannabis sativa PK16550.1 I 0.715
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.714
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.714
Si032789m.g Setaria italica Si032789m.g I 0.714
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.714
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.713
Bo3g062160 Brassica oleracea Bo3g062160 I 0.711
29801.m003096 Ricinus communis 29801.m003096 I 0.711
MYB109 Arabidopsis thaliana AT3G55730 I 0.710
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.710
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.710
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.710
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.710
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.710
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.710
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.710
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.709
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.708
Ca_12468 Cicer arietinum Ca_12468 I 0.707
OB01G46120 Oryza brachyantha OB01G46120 I 0.704
MYB1 Arabidopsis thaliana AT3G09230 D 0.703
Cla013306 Citrullus lanatus Cla013306 I 0.702
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.700
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.700
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.700
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.699
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.699
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.698
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.698
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.695
Pm021211 Prunus mume Pm021211 I 0.695
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.693
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.691
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.691
OB09G10200 Oryza brachyantha OB09G10200 I 0.691
OBART09G00310 Oryza barthii OBART09G00310 I 0.691
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.691
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.691
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.691
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.691
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.691
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.691
OS09G0106700 Oryza sativa OS09G0106700 I 0.691
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.691
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.688
mgf002573m Mimulus guttatus mgf002573m I 0.687
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.687
Bra005006 Brassica rapa Bra005006 I 0.686
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.686
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.686
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.686
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.686
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.686
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.686
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.686
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.686
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.686
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.686
OS02G0187700 Oryza sativa OS02G0187700 D 0.686
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.686
Si017917m.g Setaria italica Si017917m.g I 0.686
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.686
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.686
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.686
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.685
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.685
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.685
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.685
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.684
Cla022889 Citrullus lanatus Cla022889 I 0.684
Cucsa.232630 Cucumis sativus Cucsa.232630 I 0.684
PK29071.1 Cannabis sativa PK29071.1 I 0.684
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.683
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.683
Ca_02182 Cicer arietinum Ca_02182 I 0.683
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.682
Bo4g025810 Brassica oleracea Bo4g025810 I 0.681
Bo4g151410 Brassica oleracea Bo4g151410 I 0.680
Bra032176 Brassica rapa Bra032176 I 0.680
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.680
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.680
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.680
TCM_033907 Theobroma cacao TCM_033907 I 0.680
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.680
mgf006151m Mimulus guttatus mgf006151m I 0.680
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.680
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.680
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.679
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.679
Bo3g153550 Brassica oleracea Bo3g153550 I 0.678
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.678
Cla014191 Citrullus lanatus Cla014191 I 0.678
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.677
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.676
Bra010593 Brassica rapa Bra010593 I 0.675
mgf003084m Mimulus guttatus mgf003084m I 0.675
Bra034057 Brassica rapa Bra034057 I 0.673
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.673
MDP0000187872 Malus domestica MDP0000187872 I 0.673
mgf025567m Mimulus guttatus mgf025567m I 0.672
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.672
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.669
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.669
Cla006872 Citrullus lanatus Cla006872 I 0.669
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.669
Bra001323 Brassica rapa Bra001323 I 0.667
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.666
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.666
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.664
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.664
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.664
mgf023922m Mimulus guttatus mgf023922m I 0.663
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.662
Bo1g144680 Brassica oleracea Bo1g144680 I 0.661