Cagra.0834s0027 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.0834s0027 T297364_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC053
M07202_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a 		0.964 0.965
NAC053
M07203_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_col 		0.964 0.965
NAC053
M11079_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G10500_Q2 		0.964 0.965
NAC078
M02372_2.00 		Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN		 PBM
Weirauch et al.(2014)
pTH7209 		0.958 0.930
NAC078
M07226_2.00 		Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA		 Dap-seq
OMalley et al.(2016)
NAC2_colamp_a 		0.958 0.930
NAC078
M07227_2.00 		Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH		 Dap-seq
OMalley et al.(2016)
NAC2_col_v3a 		0.958 0.930
NAC078
M11083_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC078_Q2 		0.958 0.930
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0834s0027.1.p NAC/NAM 10 136

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10013370m.g Capsella rubella Carubv10013370m.g I 0.966
NAC053 Arabidopsis thaliana AT3G10500 D 0.964
anac053 Arabidopsis lyrata fgenesh2_kg.3__1085__AT3G10500.1 I 0.964
Bostr.22252s0010 Boechera stricta Bostr.22252s0010 I 0.964
NAC078 Arabidopsis thaliana AT5G04410 D 0.958
NAC2 Arabidopsis lyrata scaffold_600382.1 I 0.958
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I 0.958
Bra028790 Brassica rapa Bra028790 I 0.957
Bo9g180050 Brassica oleracea Bo9g180050 I 0.955
Thhalv10013110m.g Eutrema salsugineum Thhalv10013110m.g I 0.955
Bo1g143830 Brassica oleracea Bo1g143830 I 0.954
Bra009456 Brassica rapa Bra009456 I 0.954
Thhalv10020438m.g Eutrema salsugineum Thhalv10020438m.g I 0.954
Cagra.9217s0021 Capsella grandiflora Cagra.9217s0021 I 0.953
Bra005804 Brassica rapa Bra005804 I 0.952
Bra034120 Brassica rapa Bra034120 I 0.952
Bo3g002800 Brassica oleracea Bo3g002800 I 0.949
POPTR_0008s03170 Populus trichocarpa POPTR_0008s03170 I 0.934
SapurV1A.0394s0050 Salix purpurea SapurV1A.0394s0050 I 0.934
28872.m000248 Ricinus communis 28872.m000248 I 0.923
POPTR_0010s23650 Populus trichocarpa POPTR_0010s23650 I 0.921
SapurV1A.0213s0330 Salix purpurea SapurV1A.0213s0330 I 0.921
Aquca_030_00013 Aquilegia coerulea Aquca_030_00013 I 0.919
cassava22911.valid.m1 Manihot esculenta cassava22911.valid.m1 I 0.912
Cla020837 Citrullus lanatus Cla020837 I 0.905
Cucsa.308770 Cucumis sativus Cucsa.308770 I 0.905
TCM_043360 Theobroma cacao TCM_043360 I 0.900
PRUPE_ppa003239mg Prunus persica PRUPE_ppa003239mg I 0.895
Pm017550 Prunus mume Pm017550 I 0.895
Gorai.009G309000 Gossypium raimondii Gorai.009G309000 I 0.893
MDP0000457996 Malus domestica MDP0000457996 I 0.892
MDP0000695714 Malus domestica MDP0000695714 I 0.892
Ciclev10031147m.g Citrus clementina Ciclev10031147m.g I 0.890
orange1.1g007598m.g Citrus sinensis orange1.1g007598m.g I 0.890
PK11467.1 Cannabis sativa PK11467.1 I 0.886
Cla013942 Citrullus lanatus Cla013942 I 0.881
Cucsa.186150 Cucumis sativus Cucsa.186150 I 0.881
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.876
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.873