Bra028790 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra028790 T292644_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC078
M02372_2.00
Arabidopsis thaliana
NNRCAMGHMANN

NNTKDCKTGYNN
PBM
Weirauch et al.(2014)
pTH7209
0.965 0.947
NAC078
M07226_2.00
Arabidopsis thaliana
TTDCTTGNDNNDCAAG

CTTGHNNHNCAAGHAA
Dap-seq
OMalley et al.(2016)
NAC2_colamp_a
0.965 0.947
NAC078
M07227_2.00
Arabidopsis thaliana
DTTWCTTGNNNNRCAAG

CTTGYNNNNCAAGWAAH
Dap-seq
OMalley et al.(2016)
NAC2_col_v3a
0.965 0.947
NAC078
M11083_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC078_Q2
0.965 0.947
NAC053
M07202_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAG

CTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a
0.959 0.939
NAC053
M07203_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAGH

DCTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_col
0.959 0.939
NAC053
M11079_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G10500_Q2
0.959 0.939
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028790.1-P NAC/NAM 10 136

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I 0.965
NAC2 Arabidopsis lyrata scaffold_600382.1 I 0.965
Bo9g180050 Brassica oleracea Bo9g180050 I 0.965
NAC078 Arabidopsis thaliana AT5G04410 D 0.965
Thhalv10013110m.g Eutrema salsugineum Thhalv10013110m.g I 0.963
Bra009456 Brassica rapa Bra009456 I 0.963
Cagra.9217s0021 Capsella grandiflora Cagra.9217s0021 I 0.961
Bra005804 Brassica rapa Bra005804 I 0.960
Bostr.22252s0010 Boechera stricta Bostr.22252s0010 I 0.959
anac053 Arabidopsis lyrata fgenesh2_kg.3__1085__AT3G10500.1 I 0.959
NAC053 Arabidopsis thaliana AT3G10500 D 0.959
Carubv10013370m.g Capsella rubella Carubv10013370m.g I 0.957
Bo3g002800 Brassica oleracea Bo3g002800 I 0.957
Cagra.0834s0027 Capsella grandiflora Cagra.0834s0027 I 0.957
Thhalv10020438m.g Eutrema salsugineum Thhalv10020438m.g I 0.956
Bo1g143830 Brassica oleracea Bo1g143830 I 0.955
Bra034120 Brassica rapa Bra034120 I 0.953
POPTR_0008s03170 Populus trichocarpa POPTR_0008s03170 I 0.941
SapurV1A.0394s0050 Salix purpurea SapurV1A.0394s0050 I 0.941
28872.m000248 Ricinus communis 28872.m000248 I 0.937
POPTR_0010s23650 Populus trichocarpa POPTR_0010s23650 I 0.935
SapurV1A.0213s0330 Salix purpurea SapurV1A.0213s0330 I 0.935
cassava22911.valid.m1 Manihot esculenta cassava22911.valid.m1 I 0.927
Cla020837 Citrullus lanatus Cla020837 I 0.916
Cucsa.308770 Cucumis sativus Cucsa.308770 I 0.916
Aquca_030_00013 Aquilegia coerulea Aquca_030_00013 I 0.914
TCM_043360 Theobroma cacao TCM_043360 I 0.914
orange1.1g007598m.g Citrus sinensis orange1.1g007598m.g I 0.910
PRUPE_ppa003239mg Prunus persica PRUPE_ppa003239mg I 0.910
Ciclev10031147m.g Citrus clementina Ciclev10031147m.g I 0.910
Pm017550 Prunus mume Pm017550 I 0.910
MDP0000695714 Malus domestica MDP0000695714 I 0.908
MDP0000457996 Malus domestica MDP0000457996 I 0.908
PK11467.1 Cannabis sativa PK11467.1 I 0.899
Gorai.009G309000 Gossypium raimondii Gorai.009G309000 I 0.898
Cucsa.186150 Cucumis sativus Cucsa.186150 I 0.895
Cla013942 Citrullus lanatus Cla013942 I 0.895
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.894
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.877
Eucgr.J01038 Eucalyptus grandis Eucgr.J01038 I 0.876
Lus10017458.g Linum usitatissimum Lus10017458.g I 0.874
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.872
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.872