nhr-84 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003674 T306197_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in ganglia; head neurons; intestine; and pharynx. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-84
M02414_2.00		 Caenorhabditis elegans
NRGTCACAAN
NTTGTGACYN		 PBM
Weirauch et al.(2014)
pTH5828		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-232
M00700_2.00 		Caenorhabditis elegans
NNTNTDWYN
NRWHANANN		 PBM
Narasimhan et al.(2015)
pTH10647 		0.807 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02414_2.00 Nuclear receptor 1 72

DNA Binding Domains

Protein ID Domain From To Sequence
T06C12.7 Nuclear receptor 26 97

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN01168 Caenorhabditis brenneri CBN01168 I 0.988
CRE08690 Caenorhabditis remanei CRE08690 I 0.988
CJA03481 Caenorhabditis japonica CJA03481 I 0.987
CRE08760 Caenorhabditis remanei CRE08760 I 0.852
CRE30948 Caenorhabditis remanei CRE30948 I 0.829
PEQ_0000560101 Parascaris equorum PEQ_0000560101 I 0.814
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.807
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.784
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.780
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.780
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.780
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.778
MhA1_Contig1462.frz3.gene15 Meloidogyne hapla MhA1_Contig1462.frz3.gene15 I 0.775
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.773
CBG09567 Caenorhabditis briggsae CBG09567 I 0.755
nhr-130 Caenorhabditis elegans WBGene00003720 I 0.746