Pavir.Ab00358 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Ab00358 T323611_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00358.1.p SBP 178 252

Links

Other SBP family TFs
Other Panicum virgatum TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.982
Si017520m.g Setaria italica Si017520m.g N 0.981
SPL12 Oryza indica BGIOSGA020577 N 0.974
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.974
OBART06G26610 Oryza barthii OBART06G26610 N 0.974
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.974
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.974
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.974
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.974
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.974
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.974
SPL12 Oryza sativa OS06G0703500 N 0.974
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.973
OB06G34330 Oryza brachyantha OB06G34330 N 0.970
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.963
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.956
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.954
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.954
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.954
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.954
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.954
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.954
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.954
F775_31908 Aegilops tauschii F775_31908 N 0.953
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.953
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.953
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.952
Si017749m.g Setaria italica Si017749m.g N 0.952
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.951
Sb10g029190 Sorghum bicolor Sb10g029190 N 0.949
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.949
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.949
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.949
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.948
OB02G12930 Oryza brachyantha OB02G12930 N 0.947
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.947
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.947
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.944
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.944
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.944
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.944
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.944
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.944
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.944
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.944
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.944
SPL4 Oryza sativa OS02G0174100 N 0.944
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.943
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.943
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.941
OB02G14840 Oryza brachyantha OB02G14840 N 0.937
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.930
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.930
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.929
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.926
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.925
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.924
GRMZM2G414805 Zea mays GRMZM2G414805 N 0.923
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.923
SPL3 Oryza indica BGIOSGA007499 N 0.922
OBART02G03260 Oryza barthii OBART02G03260 N 0.922
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.922
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.922
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.922
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.922
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.922
OS02G0139400 Oryza sativa OS02G0139400 N 0.922
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.920
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.919
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.917
TCM_008772 Theobroma cacao TCM_008772 N 0.915
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.915
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.914
Si006472m.g Setaria italica Si006472m.g N 0.911
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.910
Ca_11356 Cicer arietinum Ca_11356 I 0.907
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.906
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.906
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.906
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.906
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.904
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.904
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.902
mgf010397m Mimulus guttatus mgf010397m N 0.894
Pm007020 Prunus mume Pm007020 N 0.892
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.890
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.889
PK16953.1 Cannabis sativa PK16953.1 N 0.889
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.886