gw1.88.46.1 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gw1.88.46.1 T334264_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.88.46.1 Sox 3 55

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
D917_01243 Trichinella nativa D917_01243 N 0.486
D917_08464 Trichinella nativa D917_08464 N 0.486
LCUP018488 Lucilia cuprina LCUP018488 N 0.456
MDP0000242568 Malus domestica MDP0000242568 I 0.444
GPLIN_000847800 Globodera pallida GPLIN_000847800 N 0.443
EFA77534.1 Polysphondylium pallidum EFA77534.1 N 0.441
Mycgr3G89562 Zymoseptoria tritici Mycgr3G89562 N 0.440
fgenesh1_pg.C_chr_1000979 Mycosphaerella graminicola fgenesh1_pg.C_chr_1000979 N 0.440
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.435
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.429
LEMA_P074670.1 Leptosphaeria maculans LEMA_P074670.1 I 0.428
W97_04494 Coniosporium apollinis W97_04494 I 0.428
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.417
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.417
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.416
SapurV1A.0237s0190 Salix purpurea SapurV1A.0237s0190 N 0.415