Cagra.0716s0040 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0716s0040 T007712_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.808 0.959
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.795 0.918
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0716s0040.1.p AP2 106 156

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.883
SNZ Arabidopsis thaliana AT2G39250 I 0.860
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.860
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.860
Bo8g087280 Brassica oleracea Bo8g087280 I 0.808
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.808
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.808
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.808
SMZ Arabidopsis thaliana AT3G54990 D 0.808
Bra007123 Brassica rapa Bra007123 I 0.808
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.808
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.808
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.805
MDP0000285955 Malus domestica MDP0000285955 I 0.805
Pm018608 Prunus mume Pm018608 I 0.805
MDP0000281079 Malus domestica MDP0000281079 I 0.805
Bo6g068410 Brassica oleracea Bo6g068410 I 0.804
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.804
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.802
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.798
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.798
Bra002510 Brassica rapa Bra002510 I 0.795
Bo9g141100 Brassica oleracea Bo9g141100 I 0.795
TOE2 Arabidopsis thaliana AT5G60120 D 0.795
Bra020262 Brassica rapa Bra020262 I 0.795
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.795
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.795
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.795
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.795
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.794
PK16652.1 Cannabis sativa PK16652.1 I 0.794
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.794
Cla020387 Citrullus lanatus Cla020387 I 0.794
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.794
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.794
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.794
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.793
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.788
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.788
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.776
Ca_26761 Cicer arietinum Ca_26761 I 0.744