CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10014108m.g
(
Capsella rubella
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Carubv10014108m.g
T017132_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB10
M06700_2.00
Arabidopsis thaliana
TWATAA
TTATWA
Dap-seq
OMalley et al.(2016)
At3g13350_col_a
0.942
0.942
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10014108m
ARID/BRIGHT
61
146
NSALFWEKLRALLGLTSKTLKVPTVGGNSLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKFLYQLE
Carubv10014108m
Sox
257
324
PKCHRSGYNFFFAEQHARLKPEYPGQERNITKKIGHMWSNLTESEKQVYQDKGVKDVERYRMEMSEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Capsella rubella
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0690s0033
Capsella grandiflora
Cagra.0690s0033
I
1.000
Bostr.3640s0117
Boechera stricta
Bostr.3640s0117
I
0.942
HMGB10
Arabidopsis thaliana
AT3G13350
D
0.942
fgenesh2_kg.3__1419__AT3G13350.1
Arabidopsis lyrata
fgenesh2_kg.3__1419__AT3G13350.1
I
0.922
Thhalv10021143m.g
Eutrema salsugineum
Thhalv10021143m.g
I
0.830
Bo5g132600
Brassica oleracea
Bo5g132600
I
0.760
Bra034683
Brassica rapa
Bra034683
I
0.758
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.722
MDP0000257366
Malus domestica
MDP0000257366
I
0.712
TCM_030511
Theobroma cacao
TCM_030511
I
0.706