Carubv10010882m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10010882m.g T022853_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LEC2
M01695_2.00 		Arabidopsis thaliana
MTGCATGC
GCATGCAK		 PBM
Weirauch et al.(2014)
pTH8181 		0.784 0.784
LEC2
M02653_2.00 		Arabidopsis thaliana
NDDYGCATGNN
NNCATGCRHHN		 SELEX
Mathelier et al.(2014)
MA0581.1 		0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010882m B3 162 262

Links

Other B3 family TFs
Other Capsella rubella TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1822s0032 Capsella grandiflora Cagra.1822s0032 I 1.000
Bostr.15697s0149 Boechera stricta Bostr.15697s0149 I 0.856
Thhalv10009849m.g Eutrema salsugineum Thhalv10009849m.g I 0.814
LEC2 Arabidopsis lyrata fgenesh2_kg.1__2994__AT1G28300.1 I 0.784
LEC2 Arabidopsis thaliana AT1G28300 D 0.784
Bo7g048240 Brassica oleracea Bo7g048240 I 0.745
Bo5g055730 Brassica oleracea Bo5g055730 I 0.742
SapurV1A.0032s0310 Salix purpurea SapurV1A.0032s0310 N 0.711