Bo7g119540 (Brassica oleracea)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bo7g119540 T024536_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.758 0.758
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g119540.1 BBR 1 269

Links

Other BBR family TFs
Other Brassica oleracea TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Bo3g149640 Brassica oleracea Bo3g149640 I 0.915
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I 0.818
Bra033583 Brassica rapa Bra033583 N 0.798
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I 0.792
BPC5 Arabidopsis thaliana AT4G38910 D 0.779
Bostr.25542s0071 Boechera stricta Bostr.25542s0071 I 0.770
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 0.755
BPC5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000068 I 0.738
Bo1g002230 Brassica oleracea Bo1g002230 N 0.723
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N 0.718
Carubv10023579m.g Capsella rubella Carubv10023579m.g N 0.714
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N 0.714
Bra011886 Brassica rapa Bra011886 N 0.704
Bra010720 Brassica rapa Bra010720 N 0.700