Bostr.25542s0071 (Boechera stricta)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Bostr.25542s0071 T024824_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.803 0.803
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.803 0.803
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.25542s0071.1.p BBR 44 338
Bostr.25542s0071.2.p BBR 1 295
Bostr.25542s0071.3.p BBR 1 284

Links

Other BBR family TFs
Other Boechera stricta TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I 0.876
BPC5 Arabidopsis thaliana AT4G38910 D 0.870
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N 0.777
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N 0.777
Carubv10023579m.g Capsella rubella Carubv10023579m.g N 0.777
Bo7g119540 Brassica oleracea Bo7g119540 I 0.770
BPC4 Arabidopsis lyrata fgenesh2_kg.4__42__AT2G21240.1 N 0.752
BPC4 Arabidopsis thaliana AT2G21240 N 0.740
Bra033583 Brassica rapa Bra033583 N 0.732
Bra010720 Brassica rapa Bra010720 N 0.730
BPC5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000068 I 0.726
Bo1g002230 Brassica oleracea Bo1g002230 N 0.708
Bo3g149650 Brassica oleracea Bo3g149650 N 0.707