CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10002462m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10002462m.g
T049334_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK09702.1
M01124_2.00
Cannabis sativa
GCACGTGV
BCACGTGC
PBM
Lambert et al.(2019)
pTH11374
0.853
0.816
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10002462m
bHLH
360
408
ELNHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIEYVNHLR
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1664s0001
Capsella grandiflora
Cagra.1664s0001
I
0.914
TT8
Arabidopsis lyrata
fgenesh2_kg.6__2968__AT4G09820.1
I
0.914
TT8
Arabidopsis thaliana
AT4G09820
I
0.914
Bostr.25463s0338
Boechera stricta
Bostr.25463s0338
I
0.914
Bra037887
Brassica rapa
Bra037887
N
0.887
Bo9g086920
Brassica oleracea
Bo9g086920
N
0.887
Bo9g086910
Brassica oleracea
Bo9g086910
N
0.887
SELMODRAFT_73360
Selaginella moellendorffii
SELMODRAFT_73360
N
0.867
SELMODRAFT_87033
Selaginella moellendorffii
SELMODRAFT_87033
N
0.867
OMERI07G05880
Oryza meridionalis
OMERI07G05880
I
0.856
ONIVA07G05400
Oryza nivara
ONIVA07G05400
I
0.856
OBART07G07130
Oryza barthii
OBART07G07130
I
0.856
LPERR07G06180
Leersia perrieri
LPERR07G06180
I
0.856
Aquca_054_00130
Aquilegia coerulea
Aquca_054_00130
I
0.853
Pm020164
Prunus mume
Pm020164
I
0.853
TT8
Vitis vinifera
VIT_07s0104g00090
I
0.853
Ca_07836
Cicer arietinum
Ca_07836
I
0.853
29647.m002101
Ricinus communis
29647.m002101
I
0.853
cassava24625.valid.m1
Manihot esculenta
cassava24625.valid.m1
I
0.853
cassava29522.valid.m1
Manihot esculenta
cassava29522.valid.m1
I
0.853
Eucgr.H01487
Eucalyptus grandis
Eucgr.H01487
I
0.853
orange1.1g037798m.g
Citrus sinensis
orange1.1g037798m.g
I
0.853
SapurV1A.0076s0350
Salix purpurea
SapurV1A.0076s0350
I
0.853
Thhalv10028584m.g
Eutrema salsugineum
Thhalv10028584m.g
I
0.853
PK09702.1
Cannabis sativa
PK09702.1
D
0.853
MDP0000617077
Malus domestica
MDP0000617077
I
0.853
MDP0000225680
Malus domestica
MDP0000225680
I
0.853
TCM_004403
Theobroma cacao
TCM_004403
I
0.853
gene27827-v1.0-hybrid
Fragaria vesca
gene27827-v1.0-hybrid
I
0.853
Gorai.004G215900
Gossypium raimondii
Gorai.004G215900
I
0.853
Gorai.007G136400
Gossypium raimondii
Gorai.007G136400
I
0.853
Ciclev10019118m.g
Citrus clementina
Ciclev10019118m.g
I
0.853
Si029106m.g
Setaria italica
Si029106m.g
I
0.853
GSMUA_Achr6G21490_001
Musa acuminata
GSMUA_Achr6G21490_001
I
0.853
GLYMA02G16670
Glycine max
GLYMA02G16670
I
0.853
GLYMA10G03140
Glycine max
GLYMA10G03140
I
0.853
Solyc09g065100.1
Solanum lycopersicum
Solyc09g065100.1
I
0.853
BRADI1G54070
Brachypodium distachyon
BRADI1G54070
I
0.853
MTR_1g072320
Medicago truncatula
MTR_1g072320
I
0.853
PGSC0003DMG400012891
Solanum tuberosum
PGSC0003DMG400012891
I
0.853
PRUPE_ppa002884m2g
Prunus persica
PRUPE_ppa002884m2g
I
0.853
Sb02g006390
Sorghum bicolor
Sb02g006390
I
0.853
AMTR_s00025p00048410
Amborella trichopoda
AMTR_s00025p00048410
I
0.853
POPTR_0005s23020
Populus trichocarpa
POPTR_0005s23020
I
0.853
Pm023805
Prunus mume
Pm023805
I
0.844
gene32494-v1.0-hybrid
Fragaria vesca
gene32494-v1.0-hybrid
I
0.844
PRUPE_ppa002762mg
Prunus persica
PRUPE_ppa002762mg
I
0.844
Bra025508
Brassica rapa
Bra025508
I
0.842
BHLH2
Arabidopsis thaliana
AT1G63650
N
0.842
EGL3
Arabidopsis lyrata
fgenesh2_kg.2__120__AT1G63650.2
N
0.842
GL3
Arabidopsis thaliana
AT5G41315
I
0.842
Thhalv10027709m.g
Eutrema salsugineum
Thhalv10027709m.g
I
0.842
Bo4g141990
Brassica oleracea
Bo4g141990
I
0.842
Carubv10004345m.g
Capsella rubella
Carubv10004345m.g
I
0.842
Bostr.7200s0145
Boechera stricta
Bostr.7200s0145
I
0.842
Bostr.29223s0199
Boechera stricta
Bostr.29223s0199
N
0.842
Cagra.2104s0007
Capsella grandiflora
Cagra.2104s0007
N
0.842
Carubv10019965m.g
Capsella rubella
Carubv10019965m.g
N
0.842
GL3
Arabidopsis lyrata
fgenesh2_kg.7__3280__AT5G41315.1
I
0.842
GLYMA19G33770
Glycine max
GLYMA19G33770
I
0.840
GSMUA_Achr3G17620_001
Musa acuminata
GSMUA_Achr3G17620_001
I
0.840