clock (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-495448 T051816_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.881 0.941
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.881 0.941
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.881 0.941
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.881 0.941
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.881 0.941
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.881 0.941
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.881 0.941
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.881 0.941
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI67652 bHLH 26 76

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
clock.L Xenopus laevis XB-GENE-6254406 I 0.914
CLOCK Sorex araneus ENSSARG00000002584 I 0.881
Clock Rattus norvegicus ENSRNOG00000002175 I 0.881
CLOCK Pteropus vampyrus ENSPVAG00000008960 I 0.881
ENSSHAG00000005555 Sarcophilus harrisii ENSSHAG00000005555 I 0.881
ENSSTOG00000016179 Ictidomys tridecemlineatus ENSSTOG00000016179 I 0.881
ENSTGUG00000007495 Taeniopygia guttata ENSTGUG00000007495 I 0.881
CLOCK Tupaia belangeri ENSTBEG00000002540 I 0.881
CLOCK Pan troglodytes ENSPTRG00000016072 I 0.881
CLOCK Sus scrofa ENSSSCG00000008909 I 0.881
ENSPSIG00000011404 Pelodiscus sinensis ENSPSIG00000011404 I 0.881
ENSPANG00000006882 Papio anubis ENSPANG00000006882 I 0.881
clocka Oryzias latipes ENSORLG00000004495 I 0.881
CLOCK Ochotona princeps ENSOPRG00000005292 I 0.881
CLOCK Procavia capensis ENSPCAG00000001407 I 0.881
ENSPFOG00000015083 Poecilia formosa ENSPFOG00000015083 I 0.881
ENSPPYG00000014762 Pongo abelii ENSPPYG00000014762 I 0.881
ENSPFOG00000017215 Poecilia formosa ENSPFOG00000017215 I 0.881
clocka Tetraodon nigroviridis ENSTNIG00000004102 I 0.881
clockb Tetraodon nigroviridis ENSTNIG00000017652 I 0.881
Gfo_R010434 Geospiza fortis Gfo_R010434 I 0.881
ENSP00000370723-D1 Bos grunniens ENSP00000370723-D1 I 0.881
ENSMMUP00000002568 Macaca fascicularis ENSMMUP00000002568 I 0.881
Myotis_brandtii_Clock_10026771 Myotis brandtii Myotis_brandtii_Clock_10026771 I 0.881
Ogr11799 Ophisaurus gracilis Ogr11799 I 0.881
Tal_R002573 Tyto alba Tal_R002573 I 0.881
Pvit_07605 Pogona vitticeps Pvit_07605 I 0.881
Brh_R001802 Buceros rhinoceros Brh_R001802 I 0.881
Afo_R013414 Aptenodytes forsteri Afo_R013414 I 0.881
CLOCK Tursiops truncatus ENSTTRG00000000960 I 0.881
ENSTSYG00000003546 Tarsius syrichta ENSTSYG00000003546 I 0.881
clocka Takifugu rubripes ENSTRUG00000001837 I 0.881
CLOCK Vicugna pacos ENSVPAG00000006438 I 0.881
ENSXMAG00000016928 Xiphophorus maculatus ENSXMAG00000016928 I 0.881
Aan_R004160 Calypte anna Aan_R004160 I 0.881
ENSXMAG00000017672 Xiphophorus maculatus ENSXMAG00000017672 I 0.881
CLOCK Anolis carolinensis ENSACAG00000009335 I 0.881
ENSONIG00000008797 Oreochromis niloticus ENSONIG00000008797 I 0.881
CLOCK Equus caballus ENSECAG00000006331 I 0.881
CLOCK Dasypus novemcinctus ENSDNOG00000018101 I 0.881
clocka Danio rerio ENSDARG00000011703 I 0.881
CLOCK Echinops telfairi ENSETEG00000015604 I 0.881
ENSFALG00000003646 Ficedula albicollis ENSFALG00000003646 I 0.881
ENSONIG00000002943 Oreochromis niloticus ENSONIG00000002943 I 0.881
CLOCK Homo sapiens ENSG00000134852 D 0.881
CLOCK Felis catus ENSFCAG00000001064 I 0.881
ENSCSAG00000005019 Chlorocebus sabaeus ENSCSAG00000005019 I 0.881
CLOCK Cavia porcellus ENSCPOG00000011807 I 0.881
ENSAMXG00000021792 Astyanax mexicanus ENSAMXG00000021792 I 0.881
ENSAMXG00000005565 Astyanax mexicanus ENSAMXG00000005565 I 0.881
ENSAMEG00000018420 Ailuropoda melanoleuca ENSAMEG00000018420 I 0.881
ENSAPLG00000007176 Anas platyrhynchos ENSAPLG00000007176 I 0.881
CLOCK Bos taurus ENSBTAG00000044044 I 0.881
CLOCK Callithrix jacchus ENSCJAG00000018261 I 0.881
CLOCK Canis familiaris ENSCAFG00000002140 I 0.881
CLOCK Gallus gallus ENSGALG00000013793 I 0.881
clocka Gasterosteus aculeatus ENSGACG00000015939 I 0.881
ENSMPUG00000005091 Mustela putorius furo ENSMPUG00000005091 I 0.881
CLOCK Monodelphis domestica ENSMODG00000020678 I 0.881
CLOCK Macaca mulatta ENSMMUG00000001919 I 0.881
Clock Mus musculus ENSMUSG00000029238 D 0.881
ENSNLEG00000008499 Nomascus leucogenys ENSNLEG00000008499 I 0.881
CLOCK Oryctolagus cuniculus ENSOCUG00000022350 I 0.881
ENSOARG00000001602 Ovis aries ENSOARG00000001602 I 0.881
CLOCK Gorilla gorilla ENSGGOG00000005753 I 0.881
CLOCK Myotis lucifugus ENSMLUG00000010007 I 0.881
ENSLACG00000013436 Latimeria chalumnae ENSLACG00000013436 I 0.881
ENSGMOG00000004825 Gadus morhua ENSGMOG00000004825 I 0.881
CLOCK Otolemur garnettii ENSOGAG00000012464 I 0.881
CLOCK Loxodonta africana ENSLAFG00000009558 I 0.881
ENSLOCG00000014043 Lepisosteus oculatus ENSLOCG00000014043 I 0.881
ENSMEUG00000005481 Macropus eugenii ENSMEUG00000005481 I 0.881
CLOCK Meleagris gallopavo ENSMGAG00000011742 I 0.881
clockb Takifugu rubripes ENSTRUG00000015488 I 0.860
CLOCK Ornithorhynchus anatinus ENSOANG00000003801 I 0.857
clockb Danio rerio ENSDARG00000003631 I 0.849
SNAPOd2T00001991001 Oikopleura dioica SNAPOd2T00001991001 I 0.846