CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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atf6
(
Danio rerio
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
ENSDARG00000012656
T059387_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endoplasmic reticulum unfolded protein response and response to hypoxia. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in nucleus. Is expressed in brain; head; liver; and trunk. Human ortholog(s) of this gene implicated in achromatopsia 7. Orthologous to human ATF6 (activating transcription factor 6). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATF6
M04254_2.00
Homo sapiens
YKRTGACGTGGCAN
NTGCCACGTCAYMR
SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_1
0.835
0.688
ATF6
M04255_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_2
0.835
0.688
ATF6
M04018_2.00
Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.1
0.835
0.688
ATF6
M04019_2.00
Homo sapiens
KAGTCACGTGK
MCACGTGACTM
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.2
0.835
0.688
ATF6
M04020_2.00
Homo sapiens
BNRTGACGTCATCA
TGATGACGTCAYNV
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.3
0.835
0.688
ATF6
M04021_2.00
Homo sapiens
ACCACGATGTY
RACATCGTGGT
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.4
0.835
0.688
ATF6
M08790_2.00
Homo sapiens
VBSSTGACGTGG
CCACGTCASSVB
Misc
Kulakovskiy et al.(2013)
ATF6A_HUMAN.H11MO.0.B
0.835
0.688
ATF6
M09947_2.00
Homo sapiens
TGACGTGG
CCACGTCA
Transfac
Matys et al.(2006)
V$ATF6_01
0.835
0.688
ATF6
M04256_2.00
Homo sapiens
YGRTGACGTGGCRN
NYGCCACGTCAYCR
SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_1
0.835
0.688
ATF6
M04257_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_2
0.835
0.688
ATF6B
M04375_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_1
0.824
0.562
ATF6B
M04376_2.00
Homo sapiens
NRTGACGTGGCR
YGCCACGTCAYN
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_2
0.824
0.562
ATF6B
M04377_2.00
Homo sapiens
TGCCACGTGGCR
YGCCACGTGGCA
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_3
0.824
0.562
ATF6B
M04041_2.00
Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.1
0.824
0.562
ATF6B
M04042_2.00
Homo sapiens
YGMCACGTGKCR
YGMCACGTGKCR
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.2
0.824
0.562
ATF6B
M04043_2.00
Homo sapiens
RTGACGTCAYC
GRTGACGTCAY
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.3
0.824
0.562
ATF6B
M04044_2.00
Homo sapiens
MCCACGATGT
ACATCGTGGK
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.4
0.824
0.562
ATF6B
M04378_2.00
Homo sapiens
SRTGACGTCAYB
VRTGACGTCAYS
SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_1
0.824
0.562
ATF6B
M04379_2.00
Homo sapiens
BRTGACGTGGCR
YGCCACGTCAYV
SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_2
0.824
0.562
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000009333
bZIP
290
353
SNASRRQQRMIKNRESASLSRKKKKEYLMTLETRLKLALTENEKLKNENGTLKRQVEGLMSENS
Links
Other
bZIP
family TFs
Other
Danio rerio
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMXG00000010343
Astyanax mexicanus
ENSAMXG00000010343
I
0.875
Myotis_brandtii_ATF6_10024274
Myotis brandtii
Myotis_brandtii_ATF6_10024274
I
0.858
ATF6
Echinops telfairi
ENSETEG00000004183
I
0.851
ATF6
Erinaceus europaeus
ENSEEUG00000000007
I
0.851
ENSDNOG00000008226
Dasypus novemcinctus
ENSDNOG00000008226
I
0.851
ATF6
Equus caballus
ENSECAG00000022307
I
0.851
ATF6
Tursiops truncatus
ENSTTRG00000008508
I
0.851
ATF6
Felis catus
ENSFCAG00000023651
I
0.851
ENSMPUG00000003493
Mustela putorius furo
ENSMPUG00000003493
I
0.851
ENSOARG00000010418
Ovis aries
ENSOARG00000010418
I
0.851
ATF6
Loxodonta africana
ENSLAFG00000003622
I
0.851
ATF6
Sus scrofa
ENSSSCG00000006346
I
0.851
ENSP00000356919-D1
Bos grunniens
ENSP00000356919-D1
I
0.851
ATF6
Vicugna pacos
ENSVPAG00000004732
I
0.851
ATF6
Canis familiaris
ENSCAFG00000013068
I
0.851
ATF6
Bos taurus
ENSBTAG00000005227
I
0.851
ATF6
Choloepus hoffmanni
ENSCHOG00000009031
I
0.851
ENSAMEG00000001631
Ailuropoda melanoleuca
ENSAMEG00000001631
I
0.851
atf6.S
Xenopus laevis
XB-GENE-983817
I
0.849
ENSAPLG00000013950
Anas platyrhynchos
ENSAPLG00000013950
I
0.848
ATF6
Taeniopygia guttata
ENSTGUG00000017057
I
0.848
ATF6
Meleagris gallopavo
ENSMGAG00000005185
I
0.848
ENSGALG00000002658
Gallus gallus
ENSGALG00000002658
I
0.848
ENSFALG00000003490
Ficedula albicollis
ENSFALG00000003490
I
0.848
Gfo_R012350
Geospiza fortis
Gfo_R012350
I
0.848
Afo_R000376
Aptenodytes forsteri
Afo_R000376
I
0.848
Brh_R005562
Buceros rhinoceros
Brh_R005562
I
0.848
Aan_R002718
Calypte anna
Aan_R002718
I
0.847
ATF6
Monodelphis domestica
ENSMODG00000000980
I
0.839
Alligator_sinensis_CCG016908.1
Alligator sinensis
Alligator_sinensis_CCG016908.1
I
0.839
ENSSHAG00000005867
Sarcophilus harrisii
ENSSHAG00000005867
I
0.839
Ogr11447
Ophisaurus gracilis
Ogr11447
I
0.838
Alligator_sinensis_CCG007030.1
Alligator sinensis
Alligator_sinensis_CCG007030.1
I
0.838
ATF6B
Anolis carolinensis
ENSACAG00000010535
I
0.837
atf6
Xenopus tropicalis
XB-GENE-983814
I
0.837
ATF6
Otolemur garnettii
ENSOGAG00000001917
I
0.835
Atf6
Mus musculus
ENSMUSG00000026663
I
0.835
ENSNLEG00000014528
Nomascus leucogenys
ENSNLEG00000014528
I
0.835
ENSTSYG00000002035
Tarsius syrichta
ENSTSYG00000002035
I
0.835
ENSP00000356919
Macaca fascicularis
ENSP00000356919
I
0.835
Atf6
Rattus norvegicus
ENSRNOG00000024632
I
0.835
ATF6
Pan troglodytes
ENSPTRG00000001596
I
0.835
ENSPPYG00000000589
Pongo abelii
ENSPPYG00000000589
I
0.835
ENSPANG00000021910
Papio anubis
ENSPANG00000021910
I
0.835
ATF6
Oryctolagus cuniculus
ENSOCUG00000007930
I
0.835
ATF6
Homo sapiens
ENSG00000118217
D
0.835
ATF6
Callithrix jacchus
ENSCJAG00000004572
I
0.835
ENSLOCG00000001278
Lepisosteus oculatus
ENSLOCG00000001278
I
0.835
ENSCSAG00000002721
Chlorocebus sabaeus
ENSCSAG00000002721
I
0.835
ATF6
Cavia porcellus
ENSCPOG00000010325
I
0.835
ATF6
Macaca mulatta
ENSMMUG00000004049
I
0.835
ATF6
Ornithorhynchus anatinus
ENSOANG00000009735
I
0.834
Pvit_17701
Pogona vitticeps
Pvit_17701
I
0.833
ENSPSIG00000016522
Pelodiscus sinensis
ENSPSIG00000016522
I
0.833
ATF6
Gorilla gorilla
ENSGGOG00000013807
I
0.831
ENSSHAG00000010010
Sarcophilus harrisii
ENSSHAG00000010010
I
0.826
ATF6B
Macaca mulatta
ENSMMUG00000015229
I
0.824
ATF6B
Sus scrofa
ENSSSCG00000001430
I
0.824
ATF6B
Gorilla gorilla
ENSGGOG00000004870
I
0.824
Atf6b
Rattus norvegicus
ENSRNOG00000000431
I
0.824
ENSSTOG00000027684
Ictidomys tridecemlineatus
ENSSTOG00000027684
I
0.824
ATF6B
Tursiops truncatus
ENSTTRG00000005958
I
0.824
ATF6B
Cavia porcellus
ENSCPOG00000023551
I
0.824
ENSCSAG00000009237
Chlorocebus sabaeus
ENSCSAG00000009237
I
0.824
Atf6b
Dipodomys ordii
ENSDORG00000004227
I
0.824
ATF6B
Equus caballus
ENSECAG00000021507
I
0.824
ATF6B
Felis catus
ENSFCAG00000018408
I
0.824
ATF6B
Homo sapiens
ENSG00000213676
D
0.824
ENSTSYG00000003325
Tarsius syrichta
ENSTSYG00000003325
I
0.824
ATF6B
Pteropus vampyrus
ENSPVAG00000005144
I
0.824
ATF6B
Callithrix jacchus
ENSCJAG00000036009
I
0.824
ENSPPYG00000016479
Pongo abelii
ENSPPYG00000016479
I
0.824
ATF6B
Otolemur garnettii
ENSOGAG00000032721
I
0.824
ATF6B
Ochotona princeps
ENSOPRG00000019053
I
0.824
ATF6B
Oryctolagus cuniculus
ENSOCUG00000023089
I
0.824
ENSAMEG00000002381
Ailuropoda melanoleuca
ENSAMEG00000002381
I
0.824
ENSMPUG00000010305
Mustela putorius furo
ENSMPUG00000010305
I
0.824
ENSNLEG00000006562
Nomascus leucogenys
ENSNLEG00000006562
I
0.824
Atf6b
Mus musculus
ENSMUSG00000015461
I
0.824
ATF6B
Monodelphis domestica
ENSMODG00000014920
I
0.824
ENSP00000364349
Macaca fascicularis
ENSP00000364349
I
0.824
ATF6B
Dasypus novemcinctus
ENSDNOG00000042135
I
0.824
ENSPANG00000006897
Papio anubis
ENSPANG00000006897
I
0.824
ATF6B
Canis familiaris
ENSCAFG00000000761
I
0.824
ATF6B
Bos taurus
ENSBTAG00000008794
I
0.824
ATF6B
Pan troglodytes
ENSPTRG00000034357
I
0.822
atf6
Takifugu rubripes
ENSTRUG00000006660
I
0.821
ENSGMOG00000018033
Gadus morhua
ENSGMOG00000018033
I
0.820
ENSPMAG00000007037
Petromyzon marinus
ENSPMAG00000007037
I
0.820
Pvit_13420
Pogona vitticeps
Pvit_13420
I
0.819
ENSONIG00000002137
Oreochromis niloticus
ENSONIG00000002137
I
0.818
atf6
Oryzias latipes
ENSORLG00000016676
I
0.818
ENSMEUG00000008122
Macropus eugenii
ENSMEUG00000008122
I
0.815
Sakowv30004199m.g
Saccoglossus kowalevskii
Sakowv30004199m.g
I
0.815
atf6
Gasterosteus aculeatus
ENSGACG00000011702
I
0.814
LotgiG236404
Lottia gigantea
LotgiG236404
I
0.813
ATF6B
Procavia capensis
ENSPCAG00000009251
I
0.812
ATF6B
Loxodonta africana
ENSLAFG00000020739
I
0.812
CapteG216503
Capitella teleta
CapteG216503
I
0.811
ATF6
Microcebus murinus
ENSMICG00000000038
I
0.811
ATF6
Tupaia belangeri
ENSTBEG00000015845
I
0.811
Myotis_brandtii_ATF6B_10007217
Myotis brandtii
Myotis_brandtii_ATF6B_10007217
I
0.810
ATF6B
Myotis lucifugus
ENSMLUG00000026641
I
0.810
ATF6
Anolis carolinensis
ENSACAG00000001336
I
0.803
ENSLACG00000012831
Latimeria chalumnae
ENSLACG00000012831
I
0.802
ENSXMAG00000013231
Xiphophorus maculatus
ENSXMAG00000013231
I
0.801
ENSPFOG00000018418
Poecilia formosa
ENSPFOG00000018418
I
0.801
Ogr01669
Ophisaurus gracilis
Ogr01669
I
0.798
estExt_fgenesh2_pg.C_110235
Branchiostoma floridae
estExt_fgenesh2_pg.C_110235
N
0.794
L798_08597
Zootermopsis nevadensis
L798_08597
I
0.792
Ocbimv22023518m.g
Octopus bimaculoides
Ocbimv22023518m.g
I
0.791
Tal_R013420
Tyto alba
Tal_R013420
I
0.791
SMAR005991
Strigamia maritima
SMAR005991
I
0.785
ENSLACG00000007649
Latimeria chalumnae
ENSLACG00000007649
I
0.783