CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_03423
(
Verticillium albo atrum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
VDBG_03423
T078386_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU01629
M01191_2.00
Neurospora crassa
TRYGSCRC
GYGSCRYA
PBM
Lambert et al.(2019)
pTH9692
0.823
0.912
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_03423T0
C2H2 ZF
278
302
FQCEVKGCGKLFSRSYNFKAHMETH
VDBG_03423T0
C2H2 ZF
310
335
FPCQIGDCNKRFVRKTDLQRHHQSVH
VDBG_03423T0
C2H2 ZF
341
362
HKCDYCSRLFARKDTLRRHMED
Links
Other
C2H2 ZF
family TFs
Other
Verticillium albo atrum
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VDBG_03423
Verticillium alfalfae
VDBG_03423
I
0.827
VDAG_10032
Verticillium dahliae
VDAG_10032
I
0.827
CGGC5_5349
Colletotrichum gloeosporioides
CGGC5_5349
I
0.824
SMAC_02359
Sordaria macrospora
SMAC_02359
I
0.823
NEUTE1DRAFT_130390
Neurospora tetrasperma
NEUTE1DRAFT_130390
I
0.823
NCU01629
Neurospora crassa
NCU01629
D
0.823
THITE_2124193
Thielavia terrestris
THITE_2124193
I
0.823
CHGG_10292
Chaetomium globosum
CHGG_10292
I
0.823
estExt_fgenesh3_kg.C_100506
Neurospora discreta
estExt_fgenesh3_kg.C_100506
I
0.823
MYCTH_2312442
Myceliophthora thermophila
MYCTH_2312442
I
0.820
F503_00525
Ophiostoma piceae uamh
F503_00525
I
0.820
MAPG_02519
Magnaporthe poae
MAPG_02519
I
0.816
GGTG_10358
Gaeumannomyces graminis
GGTG_10358
I
0.816
SBOR_4904
Sclerotinia borealis
SBOR_4904
I
0.816
Bcin13g04290
Botrytis cinerea
Bcin13g04290
I
0.816
SS1G_09588
Sclerotinia sclerotiorum
SS1G_09588
I
0.816
MBM_09584
Marssonina brunnea
MBM_09584
I
0.812
PODANS_6_5390
Podospora anserina
PODANS_6_5390
I
0.811
MGG_03133
Magnaporthe oryzae
MGG_03133
I
0.807
OIDMADRAFT_123149
Oidiodendron maius
OIDMADRAFT_123149
I
0.804
CH063_01157
Colletotrichum higginsianum
CH063_01157
I
0.798
HMPREF1624_08709
Sporothrix schenckii
HMPREF1624_08709
I
0.795
PFICI_07315
Pestalotiopsis fici
PFICI_07315
I
0.794
CFIO01_13709
Colletotrichum fioriniae
CFIO01_13709
I
0.791
GLRG_08739
Colletotrichum graminicola
GLRG_08739
I
0.782
S40285_07199
Stachybotrys chlorohalonata
S40285_07199
I
0.777
S40288_06328
Stachybotrys chartarum
S40288_06328
I
0.777
CSUB01_04852
Colletotrichum sublineola
CSUB01_04852
I
0.775
estExt_fgenesh1_pg.C_sca_11_chr8_3_00008
Nectria haematococca
estExt_fgenesh1_pg.C_sca_11_chr8_3_00008
I
0.773
NechaG101360
Fusarium solani
NechaG101360
I
0.773
FFUJ_09752
Fusarium fujikuroi
FFUJ_09752
I
0.773
FGRRES_04293
Fusarium graminearum
FGRRES_04293
I
0.773
ACRE_023020
Acremonium chrysogenum
ACRE_023020
I
0.773
FPSE_04814
Fusarium pseudograminearum
FPSE_04814
I
0.773
FOXG_13949
Fusarium oxysporum
FOXG_13949
I
0.773
PFICI_04978
Pestalotiopsis fici
PFICI_04978
I
0.772
e_gw1.2.1598.1
Cryphonectria parasitica
e_gw1.2.1598.1
I
0.765
FVEG_11371
Fusarium verticillioides
FVEG_11371
I
0.760