CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra007346
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra007346
T081896_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra007346.1-P
C2H2 ZF
226
247
FMCRKCGKVFAVRGDWRTHEKN
Bra007346.1-P
C2H2 ZF
246
272
KNCGKLWYCICGSDFKPKRSLKDHIKA
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
259 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.357260
Cucumis sativus
Cucsa.357260
N
0.825
Cucsa.242970
Cucumis sativus
Cucsa.242970
N
0.825
cassava41737.m1
Manihot esculenta
cassava41737.m1
N
0.825
cassava35956.valid.m1
Manihot esculenta
cassava35956.valid.m1
N
0.825
Bostr.20903s0019
Boechera stricta
Bostr.20903s0019
N
0.825
Cagra.0210s0004
Capsella grandiflora
Cagra.0210s0004
N
0.825
evm.TU.supercontig_84.74
Carica papaya
evm.TU.supercontig_84.74
N
0.825
GSMUA_AchrUn_randomG20320_001
Musa acuminata
GSMUA_AchrUn_randomG20320_001
N
0.825
Ciclev10005189m.g
Citrus clementina
Ciclev10005189m.g
N
0.825
Carubv10017428m.g
Capsella rubella
Carubv10017428m.g
N
0.825
GLYMA19G32430
Glycine max
GLYMA19G32430
N
0.825
27810.m000651
Ricinus communis
27810.m000651
N
0.825
AMTR_s00022p00243980
Amborella trichopoda
AMTR_s00022p00243980
N
0.825
PRUPE_ppa008185mg
Prunus persica
PRUPE_ppa008185mg
N
0.825
POPTR_0016s05310
Populus trichocarpa
POPTR_0016s05310
N
0.825
PGSC0003DMG400030271
Solanum tuberosum
PGSC0003DMG400030271
N
0.825
TCM_024788
Theobroma cacao
TCM_024788
N
0.825
NTT
Vitis vinifera
VIT_08s0007g08070
N
0.825
Pm025853
Prunus mume
Pm025853
N
0.825
Cla008187
Citrullus lanatus
Cla008187
N
0.825
Ca_07269
Cicer arietinum
Ca_07269
N
0.825
GLYMA02G31270
Glycine max
GLYMA02G31270
N
0.825
Eucgr.A02400
Eucalyptus grandis
Eucgr.A02400
N
0.825
gene14361-v1.0-hybrid
Fragaria vesca
gene14361-v1.0-hybrid
N
0.825
Bo6g073120
Brassica oleracea
Bo6g073120
N
0.825
Bo8g092070
Brassica oleracea
Bo8g092070
N
0.825
MDP0000601705
Malus domestica
MDP0000601705
N
0.825
WIP2
Arabidopsis thaliana
AT3G57670
N
0.825
SapurV1A.0018s0090
Salix purpurea
SapurV1A.0018s0090
N
0.825
orange1.1g040794m.g
Citrus sinensis
orange1.1g040794m.g
N
0.825
Bo4g111000
Brassica oleracea
Bo4g111000
N
0.825
Thhalv10006035m.g
Eutrema salsugineum
Thhalv10006035m.g
N
0.825
Bra003295
Brassica rapa
Bra003295
N
0.825
Bra014612
Brassica rapa
Bra014612
N
0.825
NTT
Arabidopsis lyrata
fgenesh2_kg.5__2209__AT3G57670.1
N
0.825
Gorai.003G089200
Gossypium raimondii
Gorai.003G089200
N
0.825
Gorai.002G152600
Gossypium raimondii
Gorai.002G152600
N
0.825
chr1.CM0318.720.nd
Lotus japonicus
chr1.CM0318.720.nd
N
0.825
PK03705.1
Cannabis sativa
PK03705.1
N
0.825
GSMUA_AchrUn_randomG22660_001
Musa acuminata
GSMUA_AchrUn_randomG22660_001
N
0.819
PRUPE_ppa024429mg
Prunus persica
PRUPE_ppa024429mg
N
0.819
PGSC0003DMG400013609
Solanum tuberosum
PGSC0003DMG400013609
N
0.819
MDP0000580545
Malus domestica
MDP0000580545
N
0.819
Ciclev10017716m.g
Citrus clementina
Ciclev10017716m.g
N
0.819
gene20598-v1.0-hybrid
Fragaria vesca
gene20598-v1.0-hybrid
N
0.819
Gorai.006G138700
Gossypium raimondii
Gorai.006G138700
N
0.819
MDP0000403797
Malus domestica
MDP0000403797
N
0.819
Pm000471
Prunus mume
Pm000471
N
0.819
orange1.1g019587m.g
Citrus sinensis
orange1.1g019587m.g
N
0.819
Solyc11g062060.1
Solanum lycopersicum
Solyc11g062060.1
N
0.819
GSMUA_Achr3G11050_001
Musa acuminata
GSMUA_Achr3G11050_001
N
0.816
cassava5227.m1
Manihot esculenta
cassava5227.m1
N
0.816
SELMODRAFT_128378
Selaginella moellendorffii
SELMODRAFT_128378
N
0.810
TCM_040610
Theobroma cacao
TCM_040610
N
0.810
POPTR_0003s20400
Populus trichocarpa
POPTR_0003s20400
N
0.810
GSMUA_Achr3G11870_001
Musa acuminata
GSMUA_Achr3G11870_001
N
0.810
Traes_7AL_1070DBD71
Triticum aestivum
Traes_7AL_1070DBD71
N
0.810
Gorai.013G250800
Gossypium raimondii
Gorai.013G250800
N
0.810
Ca_21713
Cicer arietinum
Ca_21713
N
0.810
e_gw1.203.23.1
Physcomitrella patens
e_gw1.203.23.1
N
0.810
gw1.359.34.1
Physcomitrella patens
gw1.359.34.1
N
0.810
30169.m006417
Ricinus communis
30169.m006417
N
0.810
GRMZM2G061545
Zea mays
GRMZM2G061545
N
0.810
SapurV1A.0009s0540
Salix purpurea
SapurV1A.0009s0540
N
0.810
Eucgr.J00788
Eucalyptus grandis
Eucgr.J00788
N
0.810
TRIUR3_23735
Triticum urartu
TRIUR3_23735
N
0.810
SELMODRAFT_110681
Selaginella moellendorffii
SELMODRAFT_110681
N
0.810
MLOC_65351
Hordeum vulgare
MLOC_65351
N
0.810
OBART06G20890
Oryza barthii
OBART06G20890
N
0.810
cassava34009.m1
Manihot esculenta
cassava34009.m1
N
0.805
Solyc05g009770.1
Solanum lycopersicum
Solyc05g009770.1
N
0.802
PGSC0003DMG400046144
Solanum tuberosum
PGSC0003DMG400046144
N
0.802
Lus10031838.g
Linum usitatissimum
Lus10031838.g
N
0.800
Lus10031271.g
Linum usitatissimum
Lus10031271.g
N
0.800
cassava39829.m1
Manihot esculenta
cassava39829.m1
N
0.796
TCM_005892
Theobroma cacao
TCM_005892
N
0.796
POPTR_0009s06700
Populus trichocarpa
POPTR_0009s06700
N
0.796
POPTR_0001s27490
Populus trichocarpa
POPTR_0001s27490
N
0.796
GSMUA_Achr3G03850_001
Musa acuminata
GSMUA_Achr3G03850_001
N
0.796
VIT_06s0004g01870
Vitis vinifera
VIT_06s0004g01870
N
0.795
Cla008675
Citrullus lanatus
Cla008675
N
0.795
mgf019910m
Mimulus guttatus
mgf019910m
N
0.795
GLYMA02G10970
Glycine max
GLYMA02G10970
N
0.792
SELMODRAFT_57106
Selaginella moellendorffii
SELMODRAFT_57106
N
0.792
GSMUA_Achr6G03470_001
Musa acuminata
GSMUA_Achr6G03470_001
N
0.792
Cucsa.248320
Cucumis sativus
Cucsa.248320
N
0.792
MTR_1g093095
Medicago truncatula
MTR_1g093095
N
0.792
Lus10021700.g
Linum usitatissimum
Lus10021700.g
N
0.792
Aquca_026_00228
Aquilegia coerulea
Aquca_026_00228
N
0.792
PRUPE_ppa020013m2g
Prunus persica
PRUPE_ppa020013m2g
N
0.792
Gorai.013G080100
Gossypium raimondii
Gorai.013G080100
N
0.792
GLYMA01G22120
Glycine max
GLYMA01G22120
N
0.792
DOT5
Vitis vinifera
VIT_01s0011g03100
N
0.792
SELMODRAFT_57114
Selaginella moellendorffii
SELMODRAFT_57114
N
0.792
POPTR_0010s13910
Populus trichocarpa
POPTR_0010s13910
N
0.792
Ca_08435
Cicer arietinum
Ca_08435
N
0.792
Lus10035044.g
Linum usitatissimum
Lus10035044.g
N
0.792
Cla002714
Citrullus lanatus
Cla002714
N
0.792
MDP0000303483
Malus domestica
MDP0000303483
N
0.792
AMTR_s00093p00164790
Amborella trichopoda
AMTR_s00093p00164790
N
0.792
chr2.CM1731.90.nc
Lotus japonicus
chr2.CM1731.90.nc
N
0.792
evm.TU.supercontig_1.215
Carica papaya
evm.TU.supercontig_1.215
N
0.792
TCM_011858
Theobroma cacao
TCM_011858
N
0.792
Ca_24699
Cicer arietinum
Ca_24699
N
0.792
Pm029018
Prunus mume
Pm029018
N
0.792
Eucgr.B03047
Eucalyptus grandis
Eucgr.B03047
N
0.792
cassava46219.m1
Manihot esculenta
cassava46219.m1
N
0.792
30061.m000294
Ricinus communis
30061.m000294
N
0.790
GLYMA15G42870
Glycine max
GLYMA15G42870
N
0.790
GLYMA12G36660
Glycine max
GLYMA12G36660
N
0.790
GLYMA13G27371
Glycine max
GLYMA13G27371
N
0.790
GLYMA08G16390
Glycine max
GLYMA08G16390
N
0.790
GSMUA_Achr9G12600_001
Musa acuminata
GSMUA_Achr9G12600_001
N
0.790
OGLUM06G22000
Oryza glumaepatula
OGLUM06G22000
N
0.786
Thhalv10009489m.g
Eutrema salsugineum
Thhalv10009489m.g
N
0.786
WIP6
Arabidopsis thaliana
AT1G13290
N
0.786
Carubv10012013m.g
Capsella rubella
Carubv10012013m.g
N
0.786
Bostr.13671s0117
Boechera stricta
Bostr.13671s0117
N
0.786
Cagra.3501s0170
Capsella grandiflora
Cagra.3501s0170
N
0.786
GLYMA10G34770
Glycine max
GLYMA10G34770
N
0.786
LPERR06G17470
Leersia perrieri
LPERR06G17470
N
0.786
GRMZM2G435357
Zea mays
GRMZM2G435357
N
0.786
BRADI1G36067
Brachypodium distachyon
BRADI1G36067
N
0.786
GLYMA20G32750
Glycine max
GLYMA20G32750
N
0.786
GRMZM2G436344
Zea mays
GRMZM2G436344
N
0.786
Solyc01g087050.2
Solanum lycopersicum
Solyc01g087050.2
N
0.786
ORGLA06G0173600
Oryza glaberrima
ORGLA06G0173600
N
0.786
Bra019822
Brassica rapa
Bra019822
N
0.786
Bo5g015200
Brassica oleracea
Bo5g015200
N
0.786
BGIOSGA023262
Oryza indica
BGIOSGA023262
N
0.786
Pavir.Db00765
Panicum virgatum
Pavir.Db00765
N
0.786
GSMUA_Achr4G01560_001
Musa acuminata
GSMUA_Achr4G01560_001
N
0.786
Lus10029525.g
Linum usitatissimum
Lus10029525.g
N
0.786
Lus10039613.g
Linum usitatissimum
Lus10039613.g
N
0.786
PGSC0003DMG400006808
Solanum tuberosum
PGSC0003DMG400006808
N
0.786
OPUNC06G19020
Oryza punctata
OPUNC06G19020
N
0.786
ONIVA06G24670
Oryza nivara
ONIVA06G24670
N
0.786
SELMODRAFT_36987
Selaginella moellendorffii
SELMODRAFT_36987
N
0.786
Si006616m.g
Setaria italica
Si006616m.g
N
0.786
SELMODRAFT_36986
Selaginella moellendorffii
SELMODRAFT_36986
N
0.786
OB06G28740
Oryza brachyantha
OB06G28740
N
0.786
Sb10g024040
Sorghum bicolor
Sb10g024040
N
0.786
ORUFI06G22350
Oryza rufipogon
ORUFI06G22350
N
0.786
OS06G0612300
Oryza sativa
OS06G0612300
N
0.786
MDP0000144266
Malus domestica
MDP0000144266
N
0.785
MDP0000142494
Malus domestica
MDP0000142494
N
0.785
29908.m006047
Ricinus communis
29908.m006047
N
0.782
MDP0000899280
Malus domestica
MDP0000899280
N
0.782
Ciclev10033535m.g
Citrus clementina
Ciclev10033535m.g
N
0.782
orange1.1g046329m.g
Citrus sinensis
orange1.1g046329m.g
N
0.782
gene03867-v1.0-hybrid
Fragaria vesca
gene03867-v1.0-hybrid
N
0.782
cassava44390.m1
Manihot esculenta
cassava44390.m1
N
0.782
GSMUA_Achr8G25650_001
Musa acuminata
GSMUA_Achr8G25650_001
N
0.779
GSMUA_Achr6G01410_001
Musa acuminata
GSMUA_Achr6G01410_001
N
0.776
Gorai.010G039600
Gossypium raimondii
Gorai.010G039600
N
0.776
Ciclev10003648m.g
Citrus clementina
Ciclev10003648m.g
N
0.776
SapurV1A.0027s0280
Salix purpurea
SapurV1A.0027s0280
N
0.776
TCM_034881
Theobroma cacao
TCM_034881
N
0.776
TT1
Vitis vinifera
VIT_18s0001g05860
N
0.776
orange1.1g037179m.g
Citrus sinensis
orange1.1g037179m.g
N
0.776
MDP0000573922
Malus domestica
MDP0000573922
N
0.775
Gorai.004G065400
Gossypium raimondii
Gorai.004G065400
N
0.772
ONIVA02G14580
Oryza nivara
ONIVA02G14580
N
0.772
BGIOSGA030081
Oryza indica
BGIOSGA030081
N
0.772
Gorai.004G037000
Gossypium raimondii
Gorai.004G037000
N
0.772
Gorai.007G177300
Gossypium raimondii
Gorai.007G177300
N
0.772
ORGLA09G0176200
Oryza glaberrima
ORGLA09G0176200
N
0.772
ORUFI09G04060
Oryza rufipogon
ORUFI09G04060
N
0.772
OMERI09G02890
Oryza meridionalis
OMERI09G02890
N
0.772
OBART09G03640
Oryza barthii
OBART09G03640
N
0.772
OPUNC09G03280
Oryza punctata
OPUNC09G03280
N
0.772
OGLUM09G04400
Oryza glumaepatula
OGLUM09G04400
N
0.772
Pavir.Ba03009
Panicum virgatum
Pavir.Ba03009
N
0.770
GLYMA12G09400
Glycine max
GLYMA12G09400
N
0.770
BGIOSGA030484
Oryza indica
BGIOSGA030484
N
0.770
GLYMA12G30930
Glycine max
GLYMA12G30930
N
0.770
evm.TU.contig_35924
Carica papaya
evm.TU.contig_35924
N
0.770
SapurV1A.0080s0360
Salix purpurea
SapurV1A.0080s0360
N
0.770
gene22042-v1.0-hybrid
Fragaria vesca
gene22042-v1.0-hybrid
N
0.770
Gorai.001G121700
Gossypium raimondii
Gorai.001G121700
N
0.770
BRADI4G27770
Brachypodium distachyon
BRADI4G27770
N
0.770
MDP0000131949
Malus domestica
MDP0000131949
N
0.770
Gorai.006G111400
Gossypium raimondii
Gorai.006G111400
N
0.770
Ciclev10028757m.g
Citrus clementina
Ciclev10028757m.g
N
0.770
orange1.1g039549m.g
Citrus sinensis
orange1.1g039549m.g
N
0.770
MDP0000300013
Malus domestica
MDP0000300013
N
0.770
Eucgr.B03870
Eucalyptus grandis
Eucgr.B03870
N
0.770
GLYMA11G19060
Glycine max
GLYMA11G19060
N
0.770
GRMZM2G150011
Zea mays
GRMZM2G150011
N
0.770
LPERR09G03450
Leersia perrieri
LPERR09G03450
N
0.770
OMERI09G03940
Oryza meridionalis
OMERI09G03940
N
0.770
MLOC_54308
Hordeum vulgare
MLOC_54308
N
0.770
TCM_041441
Theobroma cacao
TCM_041441
N
0.770
Traes_5BL_46BDE583B
Triticum aestivum
Traes_5BL_46BDE583B
N
0.770
TRIUR3_30537
Triticum urartu
TRIUR3_30537
N
0.770
Traes_5DL_98FA0887C
Triticum aestivum
Traes_5DL_98FA0887C
N
0.770
Sb02g020840
Sorghum bicolor
Sb02g020840
N
0.770
PRUPE_ppa023619mg
Prunus persica
PRUPE_ppa023619mg
N
0.770
OPUNC09G04260
Oryza punctata
OPUNC09G04260
N
0.770
OGLUM09G05550
Oryza glumaepatula
OGLUM09G05550
N
0.770
ONIVA08G08420
Oryza nivara
ONIVA08G08420
N
0.770
ORUFI09G05390
Oryza rufipogon
ORUFI09G05390
N
0.770
OS09G0307400
Oryza sativa
OS09G0307400
N
0.770
POPTR_0009s14590
Populus trichocarpa
POPTR_0009s14590
N
0.770
POPTR_0004s19460
Populus trichocarpa
POPTR_0004s19460
N
0.770
WIP3
Vitis vinifera
VIT_06s0080g00270
N
0.770
Si030360m.g
Setaria italica
Si030360m.g
N
0.770
30055.m001542
Ricinus communis
30055.m001542
N
0.770
cassava13451.valid.m1
Manihot esculenta
cassava13451.valid.m1
N
0.770
cassava16214.m1
Manihot esculenta
cassava16214.m1
N
0.770
GLYMA13G39370
Glycine max
GLYMA13G39370
N
0.770
Pm001374
Prunus mume
Pm001374
N
0.770
POPTR_0002s09840
Populus trichocarpa
POPTR_0002s09840
N
0.767
Cla015481
Citrullus lanatus
Cla015481
N
0.766
mgf022319m
Mimulus guttatus
mgf022319m
N
0.766
Cucsa.065460
Cucumis sativus
Cucsa.065460
N
0.766
Cucsa.050260
Cucumis sativus
Cucsa.050260
N
0.766
Ca_16482
Cicer arietinum
Ca_16482
N
0.765
chr3.CM1144.10.nc
Lotus japonicus
chr3.CM1144.10.nc
N
0.764
SapurV1A.1001s0040
Salix purpurea
SapurV1A.1001s0040
N
0.762
evm.TU.contig_31438
Carica papaya
evm.TU.contig_31438
N
0.762
orange1.1g037234m.g
Citrus sinensis
orange1.1g037234m.g
N
0.761
SapurV1A.0445s0120
Salix purpurea
SapurV1A.0445s0120
N
0.761
SapurV1A.0445s0140
Salix purpurea
SapurV1A.0445s0140
N
0.761
Bo5g081360
Brassica oleracea
Bo5g081360
N
0.760
ORGLA02G0068500
Oryza glaberrima
ORGLA02G0068500
N
0.759
OBART02G07320
Oryza barthii
OBART02G07320
N
0.759
GLYMA13G01720
Glycine max
GLYMA13G01720
N
0.758
Ca_27078
Cicer arietinum
Ca_27078
N
0.758
GLYMA14G35140
Glycine max
GLYMA14G35140
N
0.758
Cucsa.199850
Cucumis sativus
Cucsa.199850
N
0.757
Cla000184
Citrullus lanatus
Cla000184
N
0.757
OMERI08G16450
Oryza meridionalis
OMERI08G16450
N
0.756
OGLUM09G15150
Oryza glumaepatula
OGLUM09G15150
N
0.756
Pavir.Fa00506
Panicum virgatum
Pavir.Fa00506
N
0.756
LPERR08G16620
Leersia perrieri
LPERR08G16620
N
0.756
OBART08G19670
Oryza barthii
OBART08G19670
N
0.756
OB08G26650
Oryza brachyantha
OB08G26650
N
0.756
OGLUM08G20830
Oryza glumaepatula
OGLUM08G20830
N
0.756
LPERR09G10700
Leersia perrieri
LPERR09G10700
N
0.756
Pavir.Fb01879
Panicum virgatum
Pavir.Fb01879
N
0.756
OS09G0485600
Oryza sativa
OS09G0485600
N
0.756
Si013819m.g
Setaria italica
Si013819m.g
N
0.756
Sb07g028010
Sorghum bicolor
Sb07g028010
N
0.756
GSMUA_Achr5G26210_001
Musa acuminata
GSMUA_Achr5G26210_001
N
0.756
GSMUA_Achr11G18950_001
Musa acuminata
GSMUA_Achr11G18950_001
N
0.756
GRMZM2G445684
Zea mays
GRMZM2G445684
N
0.756
GRMZM2G071101
Zea mays
GRMZM2G071101
N
0.756
BRADI3G39820
Brachypodium distachyon
BRADI3G39820
N
0.756
OS08G0504000
Oryza sativa
OS08G0504000
N
0.756
ORUFI09G15680
Oryza rufipogon
ORUFI09G15680
N
0.756
ONIVA09G15100
Oryza nivara
ONIVA09G15100
N
0.756
BGIOSGA031001
Oryza indica
BGIOSGA031001
N
0.756
ONIVA08G21960
Oryza nivara
ONIVA08G21960
N
0.756
OPUNC08G17810
Oryza punctata
OPUNC08G17810
N
0.756
OPUNC09G12930
Oryza punctata
OPUNC09G12930
N
0.756
ORGLA09G0111700
Oryza glaberrima
ORGLA09G0111700
N
0.756
ORGLA08G0173000
Oryza glaberrima
ORGLA08G0173000
N
0.756
OMERI09G11270
Oryza meridionalis
OMERI09G11270
N
0.756