Alligator_sinensis_CCG001716.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001716.1 T132985_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001716.1 C2H2 ZF 369 391
Alligator_sinensis_CCG001716.1 C2H2 ZF 397 419
Alligator_sinensis_CCG001716.1 C2H2 ZF 598 620
Alligator_sinensis_CCG001716.1 C2H2 ZF 630 652
Alligator_sinensis_CCG001716.1 C2H2 ZF 923 945
Alligator_sinensis_CCG001716.1 C2H2 ZF 951 973

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10017461 Chelonia mydas Cmyd_10017461 N 0.827
SALL4 Monodelphis domestica ENSMODG00000016387 N 0.827
Gfo_R009587 Geospiza fortis Gfo_R009587 N 0.827
ENSPSIG00000009066 Pelodiscus sinensis ENSPSIG00000009066 N 0.827
ENSGALG00000007834 Gallus gallus ENSGALG00000007834 N 0.827
ENSAPLG00000006498 Anas platyrhynchos ENSAPLG00000006498 N 0.827
ENSFALG00000013149 Ficedula albicollis ENSFALG00000013149 N 0.827
ENSSHAG00000018013 Sarcophilus harrisii ENSSHAG00000018013 N 0.825
Pvit_03345 Pogona vitticeps Pvit_03345 N 0.817
SALL4 Anolis carolinensis ENSACAG00000012748 N 0.814
sall3a Takifugu rubripes ENSTRUG00000017423 N 0.811
ENSAMXG00000011111 Astyanax mexicanus ENSAMXG00000011111 N 0.809
ENSONIG00000013791 Oreochromis niloticus ENSONIG00000013791 N 0.802
sall3.S Xenopus laevis XB-GENE-17340458 N 0.800
ENSMEUG00000005793 Macropus eugenii ENSMEUG00000005793 N 0.798
sall3b Gasterosteus aculeatus ENSGACG00000002533 N 0.798
ENSAMXG00000001254 Astyanax mexicanus ENSAMXG00000001254 N 0.792
SALL4 Ornithorhynchus anatinus ENSOANG00000008667 N 0.790
BAA85900 Xenopus laevis BAA85900 N 0.787
sall4 Xenopus tropicalis XB-GENE-485252 N 0.787
ENSGMOG00000013383 Gadus morhua ENSGMOG00000013383 N 0.777
sall4.L Xenopus laevis XB-GENE-485256 N 0.774
sall3b Oryzias latipes ENSORLG00000008882 N 0.773
ENSPFOG00000013292 Poecilia formosa ENSPFOG00000013292 N 0.756
ENSXMAG00000000798 Xiphophorus maculatus ENSXMAG00000000798 N 0.756