CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0807s0010
(
Capsella grandiflora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cagra.0807s0010
T142638_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
REF6
M08081_2.00
Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH
ChIP-seq
Mathelier et al.(2014)
MA1415.1
0.811
0.944
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0807s0010.1.p
C2H2 ZF
1256
1279
YQCDMEGCTMSFNTEKQLALHKRN
Cagra.0807s0010.1.p
C2H2 ZF
1280
1303
ICPVKGCGKNFFSHKYLVQHQRVH
Cagra.0807s0010.1.p
C2H2 ZF
1309
1333
LKCPWKGCKMTFKWAWSRTEHIRVH
Cagra.0807s0010.1.p
C2H2 ZF
1339
1365
YVCAEPGCGQTFRFVSDFSRHKRKTGH
Links
Other
C2H2 ZF
family TFs
Other
Capsella grandiflora
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10016578m.g
Capsella rubella
Carubv10016578m.g
I
0.827
Thhalv10010066m.g
Eutrema salsugineum
Thhalv10010066m.g
I
0.823
scaffold_501791.1
Arabidopsis lyrata
scaffold_501791.1
I
0.816
REF6
Arabidopsis lyrata
fgenesh2_kg.5__1196__AT3G48430.1
I
0.816
Bra018060
Brassica rapa
Bra018060
I
0.816
REF6
Arabidopsis thaliana
AT3G48430
D
0.811
Thhalv10010068m.g
Eutrema salsugineum
Thhalv10010068m.g
I
0.804
Bo8g076910
Brassica oleracea
Bo8g076910
I
0.804