Carubv10016578m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10016578m.g T142722_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00 		Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1 		0.811 0.944
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016578m C2H2 ZF 1280 1303
Carubv10016578m C2H2 ZF 1304 1327
Carubv10016578m C2H2 ZF 1333 1357
Carubv10016578m C2H2 ZF 1363 1389

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0807s0010 Capsella grandiflora Cagra.0807s0010 I 0.827
Thhalv10010066m.g Eutrema salsugineum Thhalv10010066m.g I 0.823
scaffold_501791.1 Arabidopsis lyrata scaffold_501791.1 I 0.816
REF6 Arabidopsis lyrata fgenesh2_kg.5__1196__AT3G48430.1 I 0.816
Bra018060 Brassica rapa Bra018060 I 0.816
REF6 Arabidopsis thaliana AT3G48430 D 0.811
Thhalv10010068m.g Eutrema salsugineum Thhalv10010068m.g I 0.804
Bo8g076910 Brassica oleracea Bo8g076910 I 0.804