CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.C_scaffold_2000429
(
Phytophthora capsici
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh1_pg.C_scaffold_2000429
T146232_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra42912
M01181_2.00
Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY
PBM
Lambert et al.(2019)
pTH11167
0.804
0.942
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_2000429
C2H2 ZF
176
200
FVCPEVHCGKQFPRSFALRRHMRIH
fgenesh1_pg.C_scaffold_2000429
C2H2 ZF
206
230
YACDYQGCSQRFNTSGNLSRHKRIH
fgenesh1_pg.C_scaffold_2000429
C2H2 ZF
236
260
YPCCFETCGKRFNTSTKLKRHMRIH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora capsici
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HpaG802957
Hyaloperonospora arabidopsidis
HpaG802957
I
0.824
maker-pve_contig_642-snap-gene-0.15
Pythium vexans
maker-pve_contig_642-snap-gene-0.15
I
0.824
gw1.8.393.1
Phytophthora capsici
gw1.8.393.1
I
0.816
fgenesh_scip_prom.46568.8091
Phytophthora kernoviae
fgenesh_scip_prom.46568.8091
I
0.808
Phyra42912
Phytophthora ramorum
Phyra42912
D
0.804
maker-pag1_scaffold_440-fgenesh-gene-0.3
Pythium aphanidermatum
maker-pag1_scaffold_440-fgenesh-gene-0.3
I
0.804
maker-pir_contig_54-snap-gene-0.26
Pythium irregulare
maker-pir_contig_54-snap-gene-0.26
I
0.804
PITG_10815
Phytophthora infestans
PITG_10815
I
0.784
F443_10717
Phytophthora parasitica
F443_10717
I
0.784
ALNC14_012910
Albugo laibachii
ALNC14_012910
I
0.781