D917_06340 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_06340 T152879_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.773 0.798
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.773 0.798
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.773 0.798
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.773 0.798
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.761 0.825
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.761 0.825
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.761 0.825
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.761 0.781
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.761 0.781
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.761 0.781
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.755 0.807
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.755 0.807
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.755 0.807
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.755 0.807
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_06340 C2H2 ZF 190 212
D917_06340 C2H2 ZF 221 243
D917_06340 C2H2 ZF 247 269
D917_06340 C2H2 ZF 275 297
D917_06340 C2H2 ZF 303 324

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EFV52761 Trichinella spiralis EFV52761 I 0.827
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.801
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.801
D918_03987 Trichuris suis D918_03987 I 0.801
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.795
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.792
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.787
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.787
scrt1b Danio rerio ENSDARG00000040214 I 0.787
scrt1a Danio rerio ENSDARG00000100821 I 0.787
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.785
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.785
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.784
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.784
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.784
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.784
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.784
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.784
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.784
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.784
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.784
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.784
scrt1b Oryzias latipes ENSORLG00000008641 I 0.784
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.784
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.784
CapteG223614 Capitella teleta CapteG223614 I 0.783
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.782
SMAR010760 Strigamia maritima SMAR010760 I 0.782
L798_11766 Zootermopsis nevadensis L798_11766 I 0.780
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.780
CLEC001353 Cimex lectularius CLEC001353 I 0.780
RSKR_0000492900 Rhabditophanes kr3021 RSKR_0000492900 I 0.779
CapteG149623 Capitella teleta CapteG149623 I 0.779
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.778
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.778
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.777
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.776
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.776
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.775
SCRT2 Gallus gallus ENSGALG00000028912 I 0.775
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.775
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.775
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.775
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.775
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.774
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.774
A_07725 Schistosoma haematobium A_07725 I 0.774
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.774
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.774
Smp_054430 Schistosoma mansoni Smp_054430 I 0.774
AATE020159 Anopheles atroparvus AATE020159 I 0.773
ACOM031685 Anopheles coluzzii ACOM031685 I 0.773
ACHR010032 Anopheles christyi ACHR010032 I 0.773
GH15771 Drosophila grimshawi FBgn0123242 I 0.773
GJ16103 Drosophila virilis FBgn0203288 I 0.773
GD13794 Drosophila simulans FBgn0185494 I 0.773
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.773
GK17507 Drosophila willistoni FBgn0219506 I 0.773
ISCW021315 Ixodes scapularis ISCW021315 I 0.773
GE21392 Drosophila yakuba FBgn0238652 I 0.773
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.773
GM14603 Drosophila sechellia FBgn0169524 I 0.773
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.773
PHUM474180 Pediculus humanus PHUM474180 I 0.773
LCUP005780 Lucilia cuprina LCUP005780 I 0.773
GF25020 Drosophila ananassae FBgn0102012 I 0.773
GG15174 Drosophila erecta FBgn0107427 I 0.773
GM11368 Drosophila sechellia FBgn0166311 I 0.773
GI12551 Drosophila mojavensis FBgn0135308 I 0.773
scrt Drosophila melanogaster FBgn0004880 D 0.773
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.773
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.773
AGAP006791 Anopheles gambiae AGAP006791 I 0.773
ACUA022497 Anopheles culicifacies ACUA022497 I 0.773
MDOA005810 Musca domestica MDOA005810 I 0.773
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.773
AMEM013788 Anopheles merus AMEM013788 I 0.773
ASIS022059 Anopheles sinensis ASIS022059 I 0.773
AAEL005176 Aedes aegypti AAEL005176 I 0.773
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.773
AFAF007486 Anopheles farauti AFAF007486 I 0.773
AMEC013076 Anopheles melas AMEC013076 I 0.773
AFUN002786 Anopheles funestus AFUN002786 I 0.773
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.771
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.771
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.771
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.771
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.771
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.771
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.769
D915_06717 Fasciola hepatica D915_06717 I 0.769
csin111588 Clonorchis sinensis csin111588 I 0.769
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.769
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.769
T265_09545 Opisthorchis viverrini T265_09545 I 0.769
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.769
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.769
CapteG76620 Capitella teleta CapteG76620 I 0.767
CapteG176021 Capitella teleta CapteG176021 I 0.767
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.767
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.767
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.765
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.765
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.765
PHUM474050 Pediculus humanus PHUM474050 I 0.765
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.765
scrt2 Oryzias latipes ENSORLG00000015072 I 0.765
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.765
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.765
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.765
scrt2 Danio rerio ENSDARG00000056175 I 0.765
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.765
MCINX009925 Melitaea cinxia MCINX009925 I 0.763
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.763
KGM_21493 Danaus plexippus KGM_21493 I 0.763
HMEL014701 Heliconius melpomene HMEL014701 I 0.763
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.763
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.763
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.761
L892_g9690 Steinernema scapterisci L892_g9690 I 0.761
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.761
GG14232 Drosophila erecta FBgn0106493 I 0.761
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.761
SCRT2 Felis catus ENSFCAG00000010922 I 0.761
Scrt2 Rattus norvegicus ENSRNOG00000005148 I 0.761
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.761
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.761
SCRT2 Homo sapiens ENSG00000215397 D 0.761
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.761
Scrt2 Mus musculus ENSMUSG00000060257 I 0.761
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.761
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.761
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.761
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.761
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.761
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.761
GK16692 Drosophila willistoni FBgn0218694 I 0.761
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.761
GM14024 Drosophila sechellia FBgn0168953 I 0.761
GD13304 Drosophila simulans FBgn0185023 I 0.761
GD13305 Drosophila simulans FBgn0185024 I 0.761
GF24781 Drosophila ananassae FBgn0101774 I 0.761
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.761
CG12605 Drosophila melanogaster FBgn0035481 D 0.761
GE20660 Drosophila yakuba FBgn0237965 I 0.761
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.760
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.759
AAEL009230 Aedes aegypti AAEL009230 I 0.759
AAEL014359 Aedes aegypti AAEL014359 I 0.759
L889_g21793 Steinernema feltiae L889_g21793 I 0.759
LotgiG58520 Lottia gigantea LotgiG58520 I 0.759
L898_g5709 Steinernema monticolum L898_g5709 I 0.759
L893_g27175 Steinernema glaseri L893_g27175 I 0.759
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.759
AGAP006794 Anopheles gambiae AGAP006794 I 0.759
ASIS012063 Anopheles sinensis ASIS012063 I 0.759
ACOM031677 Anopheles coluzzii ACOM031677 I 0.759
AMEM017035 Anopheles merus AMEM017035 I 0.759
ACUA020861 Anopheles culicifacies ACUA020861 I 0.759
AATE010651 Anopheles atroparvus AATE010651 I 0.759
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.759
GJ16104 Drosophila virilis FBgn0203289 I 0.759
GI12763 Drosophila mojavensis FBgn0135520 I 0.759
AFAF017001 Anopheles farauti AFAF017001 I 0.759
ACUA003488 Anopheles culicifacies ACUA003488 I 0.759
AMEC015586 Anopheles melas AMEC015586 I 0.759
AFUN001835 Anopheles funestus AFUN001835 I 0.759
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.758
ACYPI34938 Acyrthosiphon pisum ACYPI34938 I 0.757
LOAG_08891 Loa loa LOAG_08891 I 0.757
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.755
SCRT1 Bos taurus ENSBTAG00000046208 I 0.755
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.755
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.755
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.755
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.755
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.755
Scrt1 Mus musculus ENSMUSG00000048385 I 0.755
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.755
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.755
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.755
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.755
SCRT1 Homo sapiens ENSG00000261678 D 0.755
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.755
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.755
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.755
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.755
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.755
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.755
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.755