Bra030325 (Brassica rapa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 Bra030325 T164306_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030325.1-P CSD 13 79

Links

Other CSD family TFs
Other Brassica rapa TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g145670 Brassica oleracea Bo4g145670 I 0.970
Bra031159 Brassica rapa Bra031159 I 0.924
Bo8g102040 Brassica oleracea Bo8g102040 I 0.924
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.894
CSP4 Arabidopsis thaliana AT2G21060 D 0.894
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.894
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.879
CSP2 Arabidopsis thaliana AT4G38680 I 0.864
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.848
Bo7g049880 Brassica oleracea Bo7g049880 I 0.848
Bo3g141510 Brassica oleracea Bo3g141510 I 0.818
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.742
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.727
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.727
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.727
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.712
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.712
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.712
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.712
Ca_11038 Cicer arietinum Ca_11038 N 0.712
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.712
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.712