SCR (Arabidopsis thaliana)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 AT3G54220 T199834_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G54220.1 GRAS 290 650

Links

Other GRAS family TFs
Other Arabidopsis thaliana TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 1.000
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 1.000
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 1.000
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 1.000
Bo8g083500 Brassica oleracea Bo8g083500 N 0.992
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.992
Bra007056 Brassica rapa Bra007056 N 0.990
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.906
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.905
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.905
30073.m002204 Ricinus communis 30073.m002204 N 0.903
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.903
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.894
TCM_017746 Theobroma cacao TCM_017746 N 0.891
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.889
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.889
PK22310.1 Cannabis sativa PK22310.1 N 0.888
Pm002956 Prunus mume Pm002956 N 0.886
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.886
MDP0000397638 Malus domestica MDP0000397638 N 0.884
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.883
SCR Vitis vinifera VIT_08s0056g00050 N 0.882
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.880
Cla012346 Citrullus lanatus Cla012346 N 0.873
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.871
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.870
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.869
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.867
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.866
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.866
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.864
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.863
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.862
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.861
PK17372.1 Cannabis sativa PK17372.1 N 0.854
Ca_09530 Cicer arietinum Ca_09530 N 0.853
mgf012242m Mimulus guttatus mgf012242m N 0.852
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.852
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.846
TRIUR3_28106 Triticum urartu TRIUR3_28106 N 0.826
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.812
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.812
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.811
OGLUM12G01020 Oryza glumaepatula OGLUM12G01020 N 0.810
OPUNC11G01240 Oryza punctata OPUNC11G01240 N 0.806
ONIVA11G01600 Oryza nivara ONIVA11G01600 N 0.806
Pavir.J19041 Panicum virgatum Pavir.J19041 N 0.803
MLOC_79758 Hordeum vulgare MLOC_79758 N 0.802
Lus10016496.g Linum usitatissimum Lus10016496.g N 0.801
BRADI4G44090 Brachypodium distachyon BRADI4G44090 N 0.798
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N 0.796
OB12G11340 Oryza brachyantha OB12G11340 N 0.795
OB11G11140 Oryza brachyantha OB11G11140 N 0.795
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.791
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.790
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.789
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.789
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.789
OBART12G01190 Oryza barthii OBART12G01190 N 0.789
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.786
F775_14336 Aegilops tauschii F775_14336 N 0.785
SCR2 Oryza sativa OS12G0122000 N 0.784
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.784
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.784
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.784
SCR1 Oryza sativa OS11G0124300 N 0.784
Pavir.J21588 Panicum virgatum Pavir.J21588 N 0.779
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.773
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.770
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.770
OBART11G01460 Oryza barthii OBART11G01460 N 0.767
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.762
ORGLA12G0010300 Oryza glaberrima ORGLA12G0010300 N 0.762
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N 0.760
LPERR11G01210 Leersia perrieri LPERR11G01210 N 0.759
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.756
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.753
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.751
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N 0.727
Pavir.Ha01915 Panicum virgatum Pavir.Ha01915 N 0.727
Traes_2AS_455BD2CA1 Triticum aestivum Traes_2AS_455BD2CA1 N 0.727
OB07G24850 Oryza brachyantha OB07G24850 N 0.719
OS07G0567700 Oryza sativa OS07G0567700 N 0.719
Pavir.J23622 Panicum virgatum Pavir.J23622 N 0.717