CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.6263s0002
(
Capsella grandiflora
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Cagra.6263s0002
T202336_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.6263s0002.1.p
GRAS
41
401
LLSLLLQCAEYVSTDHLPEASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSYLSGACVSLSEKPLSVSQSRKIFSALQTFNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGKIGNLIDPSQLGTRQGEAVVVHWMQHRLYDVTGNDLETLEILRRLKPNLITVVEQELSYDDGGSFLGRFVEALHYYSALFDALGDGLSEESGERFTVEQLVLATEIRNIVAHGGGRRRRVKWKEELNRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWI
Links
Other
GRAS
family TFs
Other
Capsella grandiflora
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10004949m.g
Capsella rubella
Carubv10004949m.g
N
0.992
fgenesh2_kg.7__3225__AT5G41920.1
Arabidopsis lyrata
fgenesh2_kg.7__3225__AT5G41920.1
N
0.953
SCL23
Arabidopsis thaliana
AT5G41920
N
0.950
Bostr.17016s0016
Boechera stricta
Bostr.17016s0016
N
0.928
Bostr.25375s0003
Boechera stricta
Bostr.25375s0003
N
0.917
Thhalv10027784m.g
Eutrema salsugineum
Thhalv10027784m.g
N
0.891
Bo4g143710
Brassica oleracea
Bo4g143710
N
0.848
OS07G0567700
Oryza sativa
OS07G0567700
N
0.781
OB07G24850
Oryza brachyantha
OB07G24850
N
0.781
Bostr.7200s0031
Boechera stricta
Bostr.7200s0031
N
0.767
LPERR11G01220
Leersia perrieri
LPERR11G01220
N
0.750
cassava29451.valid.m1
Manihot esculenta
cassava29451.valid.m1
N
0.727
scaffold_21300003.1
Arabidopsis lyrata
scaffold_21300003.1
N
0.727
Ciclev10011732m.g
Citrus clementina
Ciclev10011732m.g
N
0.721
Gorai.004G063200
Gossypium raimondii
Gorai.004G063200
N
0.720
TCM_002021
Theobroma cacao
TCM_002021
N
0.718
SapurV1A.0295s0450
Salix purpurea
SapurV1A.0295s0450
N
0.716
chr3.CM0460.360.nd
Lotus japonicus
chr3.CM0460.360.nd
N
0.716
Cucsa.180010
Cucumis sativus
Cucsa.180010
N
0.716
Pm014866
Prunus mume
Pm014866
N
0.716
gene24339-v1.0-hybrid
Fragaria vesca
gene24339-v1.0-hybrid
N
0.715
POPTR_0006s02220
Populus trichocarpa
POPTR_0006s02220
N
0.715
POPTR_0016s02030
Populus trichocarpa
POPTR_0016s02030
N
0.710
Eucgr.A00903
Eucalyptus grandis
Eucgr.A00903
N
0.710
SapurV1A.0154s0180
Salix purpurea
SapurV1A.0154s0180
N
0.707
VIT_03s0017g01660
Vitis vinifera
VIT_03s0017g01660
N
0.707
PRUPE_ppa005742mg
Prunus persica
PRUPE_ppa005742mg
N
0.707
29872.m000537
Ricinus communis
29872.m000537
N
0.704
Cla005525
Citrullus lanatus
Cla005525
N
0.704
Ca_11130
Cicer arietinum
Ca_11130
N
0.702
evm.TU.supercontig_8.295
Carica papaya
evm.TU.supercontig_8.295
N
0.702