CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
gene05720-v1.0-hybrid
(
Fragaria vesca
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
gene05720-v1.0-hybrid
T202557_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna05720.1-v1.0-hybrid
GRAS
30
434
MEQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAARSGSLKLLAAMNAAQANLAIHTHKFSVIELAGFIDLTPWHRFGFTAANAAILEAVEGFSVIHIVDLSLTHCMQIPTLVDAIASRQDGLTTPPLLKLTVAGTTEDVPPMLDLSYEELGSKLVNFARSRNIILEFRVIPSSYTDGFANLIEQLRVQNLVYPESGHEALVINCHMMLHYIPEETFQNFEPCSSSSTSITTSSTSLRSMFLKAVRGLDPTVVVLVDEDADLTSNDLVGRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADVCWKIENVIAYEGFQRVERLEPKCRWVQRMRSAGFRSVPFGEEAVNEVKAMLDEHAAGWGMKREEEDLVLTWKGHNVVFATAWM
Links
Other
GRAS
family TFs
Other
Fragaria vesca
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm002406
Prunus mume
Pm002406
N
0.909
PRUPE_ppa005079mg
Prunus persica
PRUPE_ppa005079mg
N
0.901
MDP0000247514
Malus domestica
MDP0000247514
N
0.892
VIT_07s0129g00340
Vitis vinifera
VIT_07s0129g00340
N
0.817
29661.m000901
Ricinus communis
29661.m000901
N
0.804
SapurV1A.0116s0200
Salix purpurea
SapurV1A.0116s0200
N
0.801
Aquca_042_00139
Aquilegia coerulea
Aquca_042_00139
N
0.798
POPTR_0005s18920
Populus trichocarpa
POPTR_0005s18920
N
0.798
cassava10176.m1
Manihot esculenta
cassava10176.m1
N
0.793
Gorai.007G221900
Gossypium raimondii
Gorai.007G221900
N
0.788
TCM_000764
Theobroma cacao
TCM_000764
N
0.788
cassava8647.m1
Manihot esculenta
cassava8647.m1
N
0.788
evm.TU.supercontig_6.41
Carica papaya
evm.TU.supercontig_6.41
N
0.780
Ciclev10025567m.g
Citrus clementina
Ciclev10025567m.g
N
0.777
orange1.1g043764m.g
Citrus sinensis
orange1.1g043764m.g
N
0.777
POPTR_0007s10030
Populus trichocarpa
POPTR_0007s10030
N
0.777
Solyc02g092570.1
Solanum lycopersicum
Solyc02g092570.1
N
0.763
PGSC0003DMG400024937
Solanum tuberosum
PGSC0003DMG400024937
N
0.758
Eucgr.H02292
Eucalyptus grandis
Eucgr.H02292
N
0.755
GLYMA05G22140
Glycine max
GLYMA05G22140
N
0.748
chr4.CM0128.430.nc
Lotus japonicus
chr4.CM0128.430.nc
N
0.747
PK13595.1
Cannabis sativa
PK13595.1
N
0.745
Traes_2DS_FB1D2D1A7
Triticum aestivum
Traes_2DS_FB1D2D1A7
N
0.745
GLYMA17G17710
Glycine max
GLYMA17G17710
N
0.737
MTR_4g095500
Medicago truncatula
MTR_4g095500
N
0.737
Cucsa.103040
Cucumis sativus
Cucsa.103040
N
0.728
Cla014227
Citrullus lanatus
Cla014227
N
0.726
Gorai.007G056200
Gossypium raimondii
Gorai.007G056200
N
0.723
mgf018442m
Mimulus guttatus
mgf018442m
N
0.720
GSMUA_Achr6G16880_001
Musa acuminata
GSMUA_Achr6G16880_001
N
0.710