nkx3-1 (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000078280 T208703_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx3-1
M00170_2.00 		Mus musculus
NDAAGTRBNN
NNVYACTTHN		 PBM
Badis et al.(2009)
Nkx3-1_2923 		0.842 0.825
Nkx3-1
M00420_2.00 		Mus musculus
NNAAGTRBNN
NNVYACTTNN		 PBM
Berger et al.(2008)
Nkx3-1_2923 		0.842 0.825
NKX3-1
M05255_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX 		0.842 0.825
NKX3-1
M09154_2.00 		Homo sapiens
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C 		0.842 0.825
Nkx3-1
M09184_2.00 		Mus musculus
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C 		0.842 0.825
NKX3-1
M09559_2.00 		Homo sapiens
BTRAGTRBYY
RRVYACTYAV		 Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264 		0.842 0.825
NKX3-1
M10729_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_01 		0.842 0.825
NKX3-1
M10730_2.00 		Homo sapiens
NWWTAAGTATWH
DWATACTTAWWN		 Transfac
Matys et al.(2006)
V$NKX3A_01 		0.842 0.825
NKX3-1
M10731_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX3A_Q3 		0.842 0.825
NKX3-1
M05256_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1 		0.842 0.825
NKX3-1
M05257_2.00 		Homo sapiens
NTAAYSWB
VWSRTTAN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2 		0.842 0.825
Nkx3-2
M00506_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Bapx1_2343 		0.836 0.772
NKX3-2
M05012_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX 		0.836 0.772
NKX3-2
M09138_2.00 		Homo sapiens
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C 		0.836 0.772
Nkx3-2
M09212_2.00 		Mus musculus
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B 		0.836 0.772
NKX3-2
M10663_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX32_01 		0.836 0.772
NKX3-2
M05013_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1 		0.836 0.772
NKX3-2
M05014_2.00 		Homo sapiens
NTAACGHB
VDCGTTAN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2 		0.836 0.772
bap
M00560_2.00 		Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN		 PBM
Busser et al.(2012a)
Bap 		0.832 0.754
bap
M02119_2.00 		Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN		 PBM
Weirauch et al.(2014)
pTH5945 		0.832 0.754
bap
M03812_2.00 		Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN		 SELEX
Nitta et al.(2015)
bap_1 		0.832 0.754
bap
M06504_2.00 		Drosophila melanogaster
TTAAGTR
YACTTAA		 B1H
Mathelier et al.(2014)
MA0211.1 		0.832 0.754
bap
M06287_2.00 		Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN		 B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862 		0.832 0.754
bap
M06288_2.00 		Drosophila melanogaster
NYTAAKTR
YAMTTARN		 B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862 		0.832 0.754
ENSCING00000007395
M02076_2.00 		Ciona intestinalis
NNNDWNWR
YWNWHNNN		 PBM
Weirauch et al.(2014)
pTH5922 		0.827 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000115852 Homeodomain 99 155

Links

Other Homeodomain family TFs
Other Danio rerio TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPFOG00000020885 Poecilia formosa ENSPFOG00000020885 I 0.849
estExt_fgenesh2_pg.C_1430013 Branchiostoma floridae estExt_fgenesh2_pg.C_1430013 I 0.849
ENSLOCG00000009031 Lepisosteus oculatus ENSLOCG00000009031 I 0.849
ENSXMAG00000020095 Xiphophorus maculatus ENSXMAG00000020095 I 0.849
nkx3-3 Xenopus tropicalis XB-GENE-479908 I 0.849
ENSORLG00000007716 Oryzias latipes ENSORLG00000007716 I 0.849
SPU_013047 Strongylocentrotus purpuratus SPU_013047 I 0.849
SMAR005030 Strigamia maritima SMAR005030 I 0.848
PHUM439840 Pediculus humanus PHUM439840 I 0.848
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.848
ENSAMXG00000002250 Astyanax mexicanus ENSAMXG00000002250 I 0.848
CGI_10023919 Crassostrea gigas CGI_10023919 I 0.848
ENSLACG00000012763 Latimeria chalumnae ENSLACG00000012763 I 0.848
nkx3.3 Gasterosteus aculeatus ENSGACG00000007573 I 0.848
Sakowv30040088m.g Saccoglossus kowalevskii Sakowv30040088m.g I 0.848
nkx3.3 Danio rerio ENSDARG00000069327 I 0.848
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.847
CapteG79432 Capitella teleta CapteG79432 I 0.847
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.847
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.844
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.844
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.844
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.844
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.844
NEMVEDRAFT_v1g208034 Nematostella vectensis NEMVEDRAFT_v1g208034 I 0.844
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.843
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.843
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.843
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.843
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.842
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.842
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.842
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.842
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.842
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.842
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.842
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.842
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.842
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.842
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.842
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.842
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.842
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.842
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.842
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.842
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.842
XP_002932598 Xenopus tropicalis XP_002932598 I 0.842
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.842
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.842
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.842
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.842
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.842
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.842
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.842
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.842
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.842
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.842
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.842
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.842
NKX3-1 Homo sapiens ENSG00000167034 D 0.842
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.842
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.842
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.842
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.842
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.842
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.842
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.842
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.842
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.842
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.842
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.842
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.842
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.842
ISCW014989 Ixodes scapularis ISCW014989 I 0.841
Ocbimv22026957m.g Octopus bimaculoides Ocbimv22026957m.g I 0.841
MESCA006298 Megaselia scalaris MESCA006298 I 0.838
MCINX004875 Melitaea cinxia MCINX004875 I 0.837
KGM_11246 Danaus plexippus KGM_11246 I 0.837
HelroG148616 Helobdella robusta HelroG148616 I 0.837
HMEL006181 Heliconius melpomene HMEL006181 I 0.837
BGIBMGA010706 Bombyx mori BGIBMGA010706 I 0.837
nkx3-3.S Xenopus laevis XB-GENE-865322 I 0.837
ACUA019412 Anopheles culicifacies ACUA019412 I 0.836
ADIR005347 Anopheles dirus ADIR005347 I 0.836
ENSLOCG00000009892 Lepisosteus oculatus ENSLOCG00000009892 I 0.836
ACOM028774 Anopheles coluzzii ACOM028774 I 0.836
ACHR006588 Anopheles christyi ACHR006588 I 0.836
AARA010121 Anopheles arabiensis AARA010121 I 0.836
AATE016309 Anopheles atroparvus AATE016309 I 0.836
ASIS007650 Anopheles sinensis ASIS007650 I 0.836
AEPI001627 Anopheles epiroticus AEPI001627 I 0.836
NKX3-2 Bos taurus ENSBTAG00000010896 I 0.836
ENSTTRG00000003623 Tursiops truncatus ENSTTRG00000003623 I 0.836
AFUN008966 Anopheles funestus AFUN008966 I 0.836
ASTEI07437 Anopheles stephensi ASTEI07437 I 0.836
AMAM011860 Anopheles maculatus AMAM011860 I 0.836
AMEC017317 Anopheles melas AMEC017317 I 0.836
AFAF013479 Anopheles farauti AFAF013479 I 0.836
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.836
AQUA001538 Anopheles quadriannulatus AQUA001538 I 0.836
Pvit_15821 Pogona vitticeps Pvit_15821 I 0.836
MDOA010758 Musca domestica MDOA010758 I 0.836
CPIJ004109 Culex quinquefasciatus CPIJ004109 I 0.836
AAEL006597 Aedes aegypti AAEL006597 I 0.836
AGAP003671 Anopheles gambiae AGAP003671 I 0.836
ADAC003526 Anopheles darlingi ADAC003526 I 0.836
ACYPI002893 Acyrthosiphon pisum ACYPI002893 I 0.836
nkx3-2 Xenopus tropicalis XB-GENE-876834 I 0.836
Alligator_sinensis_CCG000534.1 Alligator sinensis Alligator_sinensis_CCG000534.1 I 0.836
ENSAMXG00000003840 Astyanax mexicanus ENSAMXG00000003840 I 0.836
AMEM005009 Anopheles merus AMEM005009 I 0.836
ENSAMEG00000009342 Ailuropoda melanoleuca ENSAMEG00000009342 I 0.836
nkx3-2.S Xenopus laevis XB-GENE-876836 I 0.836
AMIN004031 Anopheles minimus AMIN004031 I 0.836
tetur04g08350 Tetranychus urticae tetur04g08350 I 0.836
LCUP000733 Lucilia cuprina LCUP000733 I 0.836
ENSXMAG00000016282 Xiphophorus maculatus ENSXMAG00000016282 I 0.836
ENSPFOG00000002882 Poecilia formosa ENSPFOG00000002882 I 0.836
ENSMMUG00000022026 Macaca mulatta ENSMMUG00000022026 I 0.836
nkx3.2 Danio rerio ENSDARG00000037639 I 0.836
NKX3-2 Procavia capensis ENSPCAG00000013077 I 0.836
NKX3-2 Monodelphis domestica ENSMODG00000024753 I 0.836
nkx3.2 Tetraodon nigroviridis ENSTNIG00000015732 I 0.836
ENSCSAG00000016338 Chlorocebus sabaeus ENSCSAG00000016338 I 0.836
NKX3-2 Callithrix jacchus ENSCJAG00000012159 I 0.836
ENSPTRG00000031253 Pan troglodytes ENSPTRG00000031253 I 0.836
ENSPSIG00000012169 Pelodiscus sinensis ENSPSIG00000012169 I 0.836
ENSNLEG00000016256 Nomascus leucogenys ENSNLEG00000016256 I 0.836
ENSPPYG00000014611 Pongo abelii ENSPPYG00000014611 I 0.836
ENSPANG00000021310 Papio anubis ENSPANG00000021310 I 0.836
NKX3-2 Dasypus novemcinctus ENSDNOG00000043074 I 0.836
Nkx3-2 Mus musculus ENSMUSG00000049691 D 0.836
nkx3.2 Gasterosteus aculeatus ENSGACG00000016378 I 0.836
NKX3-2 Otolemur garnettii ENSOGAG00000015615 I 0.836
NKX3-2 Oryctolagus cuniculus ENSOCUG00000009039 I 0.836
NKX3-2 Homo sapiens ENSG00000109705 D 0.836
ENSONIG00000002379 Oreochromis niloticus ENSONIG00000002379 I 0.836
ENSEEUG00000012691 Erinaceus europaeus ENSEEUG00000012691 I 0.836
ENSMPUG00000000476 Mustela putorius furo ENSMPUG00000000476 I 0.836
nkx3.2 Oryzias latipes ENSORLG00000000593 I 0.836
ENSOPRG00000005452 Ochotona princeps ENSOPRG00000005452 I 0.836
NKX3-2 Gorilla gorilla ENSGGOG00000008589 I 0.836
NKX3-2 Pteropus vampyrus ENSPVAG00000002830 I 0.836
NKX3-2 Cavia porcellus ENSCPOG00000005449 I 0.836
ENSSSCG00000024594 Sus scrofa ENSSSCG00000024594 I 0.836
CpipJ_CPIJ004109 Culex pipiens CpipJ_CPIJ004109 I 0.836
ENSLACG00000003608 Latimeria chalumnae ENSLACG00000003608 I 0.836
Nkx3-2 Rattus norvegicus ENSRNOG00000060782 I 0.836
ENSGMOG00000018725 Gadus morhua ENSGMOG00000018725 I 0.836
ENSSTOG00000021803 Ictidomys tridecemlineatus ENSSTOG00000021803 I 0.836
ENSMICG00000000190 Microcebus murinus ENSMICG00000000190 I 0.836
NKX3-2 Canis familiaris ENSCAFG00000015412 I 0.836
NKX3-2 Myotis lucifugus ENSMLUG00000008362 I 0.836
PPAI010327 Phlebotomus papatasi PPAI010327 I 0.836
NKX3-2 Loxodonta africana ENSLAFG00000031404 I 0.836
LDEC009723 Leptinotarsa decemlineata LDEC009723 I 0.835
YQE_10102 Dendroctonus ponderosae YQE_10102 I 0.835
LotgiG60615 Lottia gigantea LotgiG60615 I 0.835
TC012743 Tribolium castaneum TC012743 I 0.835
bap Drosophila melanogaster FBgn0004862 D 0.832
bap Drosophila simulans FBgn0067504 I 0.832
ACEP23863 Atta cephalotes ACEP23863 I 0.832
Hsal_06436--XP_001120208.1_APIME Harpegnathos saltator Hsal_06436--XP_001120208.1_APIME I 0.832
GA20672 Drosophila pseudoobscura FBgn0080666 I 0.832
GJ14311 Drosophila virilis FBgn0201526 I 0.832
SINV22315 Solenopsis invicta SINV22315 I 0.832
NV25828 Nasonia vitripennis NV25828 I 0.832
GK14503 Drosophila willistoni FBgn0216509 I 0.832
GB47401 Apis mellifera GB47401 I 0.832
GE25732 Drosophila yakuba FBgn0242790 I 0.832
bap Drosophila sechellia FBgn0067536 I 0.832
GL27337 Drosophila persimilis FBgn0164918 I 0.832
GF18600 Drosophila ananassae FBgn0095618 I 0.832
GG24598 Drosophila erecta FBgn0116730 I 0.832
GH22032 Drosophila grimshawi FBgn0129493 I 0.832
GI21951 Drosophila mojavensis FBgn0144680 I 0.832
CLEC002956 Cimex lectularius CLEC002956 I 0.829
RPRC001122 Rhodnius prolixus RPRC001122 I 0.828
ENSCING00000007395 Ciona intestinalis ENSCING00000007395 D 0.827
ENSP00000371875 Macaca fascicularis ENSP00000371875 I 0.820
PXEA_0003190801 Protopolystoma xenopodis PXEA_0003190801 I 0.816
SMRZ_0000016501 Schistosoma margrebowiei SMRZ_0000016501 I 0.816
A_02450 Schistosoma haematobium A_02450 I 0.816
csin109461 Clonorchis sinensis csin109461 I 0.816
SMTD_0000549701 Schistosoma mattheei SMTD_0000549701 I 0.816
Smp_140730 Schistosoma mansoni Smp_140730 I 0.816
SMU15003549 Schmidtea mediterranea SMU15003549 I 0.803
BGLB010692 Biomphalaria glabrata BGLB010692 I 0.793
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.748
Aan_R009530 Calypte anna Aan_R009530 I 0.726
ENSONIG00000018347 Oreochromis niloticus ENSONIG00000018347 I 0.711
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.704
D915_02578 Fasciola hepatica D915_02578 I 0.703
HelroG138724 Helobdella robusta HelroG138724 I 0.683
MCOS_0000074801 Mesocestoides corti MCOS_0000074801 I 0.676
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.645
TASK_0000475201 Taenia asiatica TASK_0000475201 I 0.644
EmuJ_000895600 Echinococcus multilocularis EmuJ_000895600 I 0.644
ECANG7_00763 Echinococcus canadensis ECANG7_00763 I 0.644
TsM_000540100 Taenia solium TsM_000540100 I 0.644
TTAC_0000184701 Hydatigera taeniaeformis TTAC_0000184701 I 0.644
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.640
D918_06873 Trichuris suis D918_06873 I 0.637
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.637
NKX2-6 Pteropus vampyrus ENSPVAG00000005380 I 0.628
L893_g18140 Steinernema glaseri L893_g18140 I 0.628
NKX2-6 Canis familiaris ENSCAFG00000024691 I 0.628
NKX2-6 Equus caballus ENSECAG00000013714 I 0.628
nLs.2.1.2.g07743 Litomosoides sigmodontis nLs.2.1.2.g07743 I 0.623
BTMF_0000772101 Brugia timori BTMF_0000772101 I 0.623
ENSAMXG00000015414 Astyanax mexicanus ENSAMXG00000015414 I 0.616
ENSPFOG00000009440 Poecilia formosa ENSPFOG00000009440 I 0.615
ENSONIG00000000279 Oreochromis niloticus ENSONIG00000000279 I 0.615
ENSXMAG00000005680 Xiphophorus maculatus ENSXMAG00000005680 I 0.615
NKX2-3 Takifugu rubripes ENSTRUG00000003800 I 0.615
NKX2-3 Takifugu rubripes ENSTRUG00000002729 I 0.615
hlx Ciona intestinalis ENSCING00000019191 I 0.614
Minc11316 Meloidogyne incognita Minc11316 I 0.612
WUBG_10043 Wuchereria bancrofti WUBG_10043 I 0.610
ENSTGUG00000004550 Taeniopygia guttata ENSTGUG00000004550 I 0.606
D917_04750 Trichinella nativa D917_04750 I 0.605
tetur22g00030 Tetranychus urticae tetur22g00030 I 0.604
SMUV_0000700101 Syphacia muris SMUV_0000700101 I 0.602
nkx2.7 Gasterosteus aculeatus ENSGACG00000010780 I 0.602
A_06201 Schistosoma haematobium A_06201 I 0.601