CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ASU_08722
(
Ascaris suum
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ASU_08722
T237830_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
eyg-1
M00680_2.00
Caenorhabditis elegans
NNTAATYNN
NNRATTANN
PBM
Narasimhan et al.(2015)
pTH10787
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ASU_08722
Paired box
108
170
NKSFTHTSTATKPKVATPQVVAKIEQYKRDNPTIFAWEIRERLINEAICEQPPSVSSINRILR
ASU_08722
Homeodomain
291
347
RCSRSSFAPEQLACLESVFANSPYPTPAERIALTKKTQLPEARIQVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Ascaris suum
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCNE_0000883101
Toxocara canis
TCNE_0000883101
I
0.933
PEQ_0001032101
Parascaris equorum
PEQ_0001032101
N
0.904
ANCCAN_21794
Ancylostoma caninum
ANCCAN_21794
N
0.783
DICVIV_03222
Dictyocaulus viviparus
DICVIV_03222
I
0.758
L892_g3679
Steinernema scapterisci
L892_g3679
I
0.744
ANCCEY_03349
Ancylostoma ceylanicum
ANCCEY_03349
N
0.742
L893_g24526
Steinernema glaseri
L893_g24526
N
0.733
CBG01026
Caenorhabditis briggsae
CBG01026
I
0.725
CRE07683
Caenorhabditis remanei
CRE07683
I
0.717
eyg-1
Caenorhabditis elegans
WBGene00013147
D
0.708
DME_0000554401
Dracunculus medinensis
DME_0000554401
I
0.708
BXY_1599800
Bursaphelenchus xylophilus
BXY_1599800
N
0.700