Ciclev10011433m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10011433m.g T250642_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.961 0.905
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.961 0.905
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.961 0.905
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.958 0.838
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011432m MADF 142 223
Ciclev10011433m MADF 142 223
Ciclev10011499m MADF 142 223
Ciclev10011500m MADF 142 223
Ciclev10011502m MADF 142 223

Links

Other MADF family TFs
Other Citrus clementina TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla018015 Citrullus lanatus Cla018015 I 0.968
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.968
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.967
29815.m000504 Ricinus communis 29815.m000504 I 0.962
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.961
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.961
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.961
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.960
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.960
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.960
Bra029812 Brassica rapa Bra029812 I 0.959
Bo5g137800 Brassica oleracea Bo5g137800 I 0.959
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.959
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.959
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.958
Pm026265 Prunus mume Pm026265 I 0.958
PK04914.1 Cannabis sativa PK04914.1 D 0.958
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.957
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.956
Ca_20148 Cicer arietinum Ca_20148 I 0.956
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.956
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.955
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.955
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.955
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.951
TCM_022397 Theobroma cacao TCM_022397 I 0.951
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.940
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.940
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.936
mgf008067m Mimulus guttatus mgf008067m I 0.927
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.921
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.912
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.911
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.911
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.909
MDP0000415733 Malus domestica MDP0000415733 I 0.903
MDP0000399495 Malus domestica MDP0000399495 I 0.903
MDP0000201016 Malus domestica MDP0000201016 I 0.903
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.899
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.886
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.885
28077.m000081 Ricinus communis 28077.m000081 I 0.881
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.881
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.881
TCM_043551 Theobroma cacao TCM_043551 I 0.879
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.869
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.866
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.866
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.866
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.866
OB04G18670 Oryza brachyantha OB04G18670 I 0.866
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.864
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.864
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.864
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.864
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.855
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.843
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.843
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.843
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.843
F775_31501 Aegilops tauschii F775_31501 I 0.843
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.843
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.832
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.829
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.829
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.829
Si009787m.g Setaria italica Si009787m.g I 0.826
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.820