OPUNC06G24880 (Oryza punctata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OPUNC06G24880 T255331_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.935 0.935
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.761 0.761
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.739 0.739
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OPUNC06G24880.1 MADS box 10 55

Links

Other MADS box family TFs
Other Oryza punctata TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29782.m000119 Ricinus communis 29782.m000119 I 0.717
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.750
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.750
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.708
AP3 Vitis vinifera VIT_18s0001g13460 I 0.750
AP3 Arabidopsis thaliana AT3G54340 D 0.708
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.708
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.729
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.771
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.935
Bo4g120010 Brassica oleracea Bo4g120010 I 0.708
Bo8g083600 Brassica oleracea Bo8g083600 I 0.708
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.708
Bra007067 Brassica rapa Bra007067 I 0.708
Bra014822 Brassica rapa Bra014822 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.875
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.708
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.708
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.708
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.708
Ca_04909 Cicer arietinum Ca_04909 I 0.750
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.750
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.729
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.708
Cla021117 Citrullus lanatus Cla021117 I 0.750
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.750
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.708
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.739
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.739
F775_21044 Aegilops tauschii F775_21044 I 0.729
F775_30609 Aegilops tauschii F775_30609 I 0.828
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.783
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.750
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.729
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.771
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.708
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.935
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.826
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.826
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.935
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.761
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.761
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.750
MADS16 Oryza sativa OS06G0712700 D 0.935
mgf022278m Mimulus guttatus mgf022278m I 0.739
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.875
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.750
OB06G35020 Oryza brachyantha OB06G35020 I 0.935
OBART06G27230 Oryza barthii OBART06G27230 I 0.935
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.935
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.935
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.935
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.935
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.729
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.729
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.935
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.935
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.935
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.935
Pm006266 Prunus mume Pm006266 I 0.761
Pm026712 Prunus mume Pm026712 I 0.702
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.717
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.761
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.717
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.717
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.935
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.739
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.739
Si007221m.g Setaria italica Si007221m.g I 0.875
TCM_000266 Theobroma cacao TCM_000266 I 0.708
TCM_034148 Theobroma cacao TCM_034148 I 0.761
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.708
Traes_5AS_029A65B0A Triticum aestivum Traes_5AS_029A65B0A I 0.717
Traes_5DS_3EBE121C7 Triticum aestivum Traes_5DS_3EBE121C7 I 0.717
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.875
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.920
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.875
TRIUR3_09267 Triticum urartu TRIUR3_09267 I 0.717
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.875
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.729