SELMODRAFT_449788 (Selaginella moellendorffii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 SELMODRAFT_449788 T256148_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.723 0.723
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.702 0.702
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.702 0.702
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.702 0.702
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.702 0.702
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.702 0.702
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ35566 MADS box 10 56

Links

Other MADS box family TFs
Other Selaginella moellendorffii TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_451128 Selaginella moellendorffii SELMODRAFT_451128 I 1.000
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.787
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.787
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.787
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.766
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.766
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.766
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.766
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.766
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.750
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.750
Pm005355 Prunus mume Pm005355 I 0.750
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.750
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.745
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.745
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.745
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.745
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.729
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.729
mgf017317m Mimulus guttatus mgf017317m I 0.729
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.729
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.729
30170.m013776 Ricinus communis 30170.m013776 I 0.729
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.729
Cucsa.362960 Cucumis sativus Cucsa.362960 I 0.729
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.729
Cla007057 Citrullus lanatus Cla007057 I 0.729
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.723
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.723
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.723
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.723
Cagra.7242s0001 Capsella grandiflora Cagra.7242s0001 I 0.723
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.723
Carubv10001906m.g Capsella rubella Carubv10001906m.g I 0.723
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.723
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.723
Ciclev10023160m.g Citrus clementina Ciclev10023160m.g I 0.723
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.723
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.723
OBART08G19110 Oryza barthii OBART08G19110 I 0.723
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.723
Eucgr.D01939 Eucalyptus grandis Eucgr.D01939 I 0.723
Ca_16423 Cicer arietinum Ca_16423 I 0.723
Eucgr.C01942 Eucalyptus grandis Eucgr.C01942 I 0.723
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.723
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.723
OS08G0494100 Oryza sativa OS08G0494100 I 0.723
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.723
cassava723.valid.m1 Manihot esculenta cassava723.valid.m1 I 0.723
Cucsa.302640 Cucumis sativus Cucsa.302640 I 0.723
Si013985m.g Setaria italica Si013985m.g I 0.723
TCM_034970 Theobroma cacao TCM_034970 I 0.723
TCM_005456 Theobroma cacao TCM_005456 I 0.723
TCM_016147 Theobroma cacao TCM_016147 I 0.723
Cla014721 Citrullus lanatus Cla014721 I 0.723
cassava30125.valid.m1 Manihot esculenta cassava30125.valid.m1 I 0.723
mgf007062m Mimulus guttatus mgf007062m I 0.723
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.723
Bostr.25463s0138 Boechera stricta Bostr.25463s0138 I 0.723
TCM_001182 Theobroma cacao TCM_001182 I 0.723
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.723
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.723
Cla011687 Citrullus lanatus Cla011687 I 0.723
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.723
Ca_01572 Cicer arietinum Ca_01572 I 0.723
MADS50 Oryza sativa OS03G0122600 D 0.723
Eucgr.D02425 Eucalyptus grandis Eucgr.D02425 I 0.723
GLYMA09G40230 Glycine max GLYMA09G40230 I 0.723
GLYMA18G45780 Glycine max GLYMA18G45780 I 0.723
OBART03G01800 Oryza barthii OBART03G01800 I 0.723
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.723
AGL14 Arabidopsis lyrata fgenesh2_kg.6__3138__AT4G11880.1 I 0.723
Lus10014144.g Linum usitatissimum Lus10014144.g I 0.723
Lus10014143.g Linum usitatissimum Lus10014143.g I 0.723
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.723
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.723
Lus10006715.g Linum usitatissimum Lus10006715.g I 0.723
Lus10006716.g Linum usitatissimum Lus10006716.g I 0.723
MDP0000243965 Malus domestica MDP0000243965 I 0.723
orange1.1g028363m.g Citrus sinensis orange1.1g028363m.g I 0.723
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.723
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.723
AGL14 Arabidopsis thaliana AT4G11880 I 0.723
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.723
Thhalv10028949m.g Eutrema salsugineum Thhalv10028949m.g I 0.723
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.723
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.723
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.723
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.723
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.723
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.723
GLYMA07G08831 Glycine max GLYMA07G08831 I 0.723
MTR_7g075870 Medicago truncatula MTR_7g075870 I 0.723
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.723
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.723
OB03G11760 Oryza brachyantha OB03G11760 I 0.723
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.723
orange1.1g027691m.g Citrus sinensis orange1.1g027691m.g I 0.708
Ciclev10022568m.g Citrus clementina Ciclev10022568m.g I 0.708
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.708
Pm019181 Prunus mume Pm019181 I 0.708
PK09312.1 Cannabis sativa PK09312.1 I 0.708
PK12001.1 Cannabis sativa PK12001.1 I 0.708
29908.m005982 Ricinus communis 29908.m005982 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
Gorai.007G237300 Gossypium raimondii Gorai.007G237300 I 0.708
Gorai.008G242700 Gossypium raimondii Gorai.008G242700 I 0.708
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.708
Gorai.005G221300 Gossypium raimondii Gorai.005G221300 I 0.708
Thhalv10001632m.g Eutrema salsugineum Thhalv10001632m.g I 0.702
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.702
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.702
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.702
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.702
SapurV1A.0045s0580 Salix purpurea SapurV1A.0045s0580 I 0.702
SapurV1A.0282s0240 Salix purpurea SapurV1A.0282s0240 I 0.702
Cucsa.251170 Cucumis sativus Cucsa.251170 I 0.702
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.702
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.702
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.702
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.702
PK19764.1 Cannabis sativa PK19764.1 I 0.702
Gorai.007G093800 Gossypium raimondii Gorai.007G093800 I 0.702
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.702
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.702
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.702
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.702
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.702
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.702
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.702
Lus10038895.g Linum usitatissimum Lus10038895.g I 0.702
MDP0000574222 Malus domestica MDP0000574222 I 0.702
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.702
Gorai.004G132000 Gossypium raimondii Gorai.004G132000 I 0.702
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.702
mgf015964m Mimulus guttatus mgf015964m I 0.702
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.702
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.702
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.702
Pavir.J13837 Panicum virgatum Pavir.J13837 I 0.702
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.702
mgf025830m Mimulus guttatus mgf025830m I 0.702
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.702
Cagra.0050s0134 Capsella grandiflora Cagra.0050s0134 I 0.702
Carubv10024046m.g Capsella rubella Carubv10024046m.g I 0.702
Bostr.25993s0208 Boechera stricta Bostr.25993s0208 I 0.702
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.702
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.702
Si038299m.g Setaria italica Si038299m.g I 0.702
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.702
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.702
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.702
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.702
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.702
Bra039324 Brassica rapa Bra039324 I 0.702
Bra020826 Brassica rapa Bra020826 I 0.702
Bra029424 Brassica rapa Bra029424 I 0.702
Bra030228 Brassica rapa Bra030228 I 0.702
Bra038511 Brassica rapa Bra038511 I 0.702
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.702
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.702
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.702
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.702
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.702
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.702
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.702
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.702
GRMZM2G370777 Zea mays GRMZM2G370777 I 0.702
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.702
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.702
Bra016386 Brassica rapa Bra016386 I 0.702
Bra013662 Brassica rapa Bra013662 I 0.702
Bo3g038880 Brassica oleracea Bo3g038880 I 0.702
Bo3g165710 Brassica oleracea Bo3g165710 I 0.702
Bo4g149800 Brassica oleracea Bo4g149800 I 0.702
Bo4g195720 Brassica oleracea Bo4g195720 I 0.702
Bo1g031900 Brassica oleracea Bo1g031900 I 0.702
MADS56 Oryza indica BGIOSGA033356 I 0.702
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.702
AGL104 Arabidopsis thaliana AT1G22130 I 0.702
SVP Arabidopsis thaliana AT2G22540 D 0.702
SOC1 Arabidopsis thaliana AT2G45660 D 0.702
Bo6g072840 Brassica oleracea Bo6g072840 I 0.702
Bo7g060150 Brassica oleracea Bo7g060150 I 0.702
Bra000393 Brassica rapa Bra000393 I 0.702
Bra003278 Brassica rapa Bra003278 I 0.702
Bra007324 Brassica rapa Bra007324 I 0.702
Bra012308 Brassica rapa Bra012308 I 0.702
Bra000392 Brassica rapa Bra000392 I 0.702
Bo9g093920 Brassica oleracea Bo9g093920 I 0.702
Bo8g071330 Brassica oleracea Bo8g071330 I 0.702
Bo8g091790 Brassica oleracea Bo8g091790 I 0.702
Bo8g101000 Brassica oleracea Bo8g101000 I 0.702
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.702
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.702
Sb10g007380 Sorghum bicolor Sb10g007380 I 0.702
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.702
AGL20 Arabidopsis lyrata scaffold_403512.1 I 0.702
Si007641m.g Setaria italica Si007641m.g I 0.702
Sb04g033930 Sorghum bicolor Sb04g033930 I 0.702
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I 0.702
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.702
POPTR_0001s08510 Populus trichocarpa POPTR_0001s08510 I 0.702
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.702
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.702
Si017524m.g Setaria italica Si017524m.g I 0.702
A1YJE4_HORVD Hordeum vulgare A1YJE4_HORVD D 0.702
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.702
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.702
Cla014322 Citrullus lanatus Cla014322 I 0.702
Pm018089 Prunus mume Pm018089 I 0.702
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.702
SVP Vitis vinifera VIT_00s0313g00070 I 0.702
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.702
Traes_6AL_A93C6F2FC Triticum aestivum Traes_6AL_A93C6F2FC I 0.702
Traes_6DL_D8C9E421C Triticum aestivum Traes_6DL_D8C9E421C I 0.702
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.702
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.702
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.702
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.702
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.702
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.702
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.702
OBART10G16960 Oryza barthii OBART10G16960 I 0.702
OB08G26170 Oryza brachyantha OB08G26170 I 0.702
OB10G24040 Oryza brachyantha OB10G24040 I 0.702
OBART06G07860 Oryza barthii OBART06G07860 I 0.702
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.702
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.702
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.702
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.702
OS06G0223300 Oryza sativa OS06G0223300 I 0.702
MADS56 Oryza sativa OS10G0536100 I 0.702
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.702
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.702
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.702
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.702
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.702
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.702