Carubv10023471m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10023471m.g T286421_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023470m Myb 4 53
Carubv10023470m Myb 59 104
Carubv10023471m Myb 4 53
Carubv10023471m Myb 59 104

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.C_scaffold_4001520 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001520 N 0.905
Cagra.18121s0004 Capsella grandiflora Cagra.18121s0004 N 0.905
Bostr.23794s0314 Boechera stricta Bostr.23794s0314 N 0.905
Bra005177 Brassica rapa Bra005177 N 0.905
scaffold_402408.1 Arabidopsis lyrata scaffold_402408.1 N 0.905
Thhalv10016830m.g Eutrema salsugineum Thhalv10016830m.g N 0.905
Bo4g030340 Brassica oleracea Bo4g030340 N 0.905
AS1 Arabidopsis thaliana AT2G37630 N 0.905
Bo3g031880 Brassica oleracea Bo3g031880 N 0.901
Bra000011 Brassica rapa Bra000011 N 0.901
evm.TU.supercontig_333.1 Carica papaya evm.TU.supercontig_333.1 N 0.884
Eucgr.K03130 Eucalyptus grandis Eucgr.K03130 N 0.879
28603.m000172 Ricinus communis 28603.m000172 N 0.877
cassava35798.valid.m1 Manihot esculenta cassava35798.valid.m1 N 0.877
Pm002699 Prunus mume Pm002699 N 0.877
29767.m000199 Ricinus communis 29767.m000199 N 0.877
GLYMA03G19030 Glycine max GLYMA03G19030 N 0.877
PRUPE_ppa007753mg Prunus persica PRUPE_ppa007753mg N 0.877
Solyc09g010840.1 Solanum lycopersicum Solyc09g010840.1 N 0.876
PGSC0003DMG400008834 Solanum tuberosum PGSC0003DMG400008834 N 0.876
chr3.LjT11G09.150.nc Lotus japonicus chr3.LjT11G09.150.nc N 0.875
GLYMA18G26600 Glycine max GLYMA18G26600 N 0.874
Lus10024392.g Linum usitatissimum Lus10024392.g N 0.872
MDP0000708334 Malus domestica MDP0000708334 N 0.871
Aquca_027_00369 Aquilegia coerulea Aquca_027_00369 N 0.871
VIT_08s0007g00410 Vitis vinifera VIT_08s0007g00410 N 0.871
SapurV1A.0001s1780 Salix purpurea SapurV1A.0001s1780 N 0.868
POPTR_0006s08610 Populus trichocarpa POPTR_0006s08610 N 0.868
MDP0000282792 Malus domestica MDP0000282792 N 0.868
Gorai.012G104100 Gossypium raimondii Gorai.012G104100 N 0.863
TCM_021932 Theobroma cacao TCM_021932 N 0.863
gene18421-v1.0-hybrid Fragaria vesca gene18421-v1.0-hybrid N 0.857
gene08535-v1.0-hybrid Fragaria vesca gene08535-v1.0-hybrid N 0.857
Sb08g018840 Sorghum bicolor Sb08g018840 N 0.854
GRMZM2G403620 Zea mays GRMZM2G403620 N 0.854
Ciclev10012089m.g Citrus clementina Ciclev10012089m.g N 0.843
orange1.1g018768m.g Citrus sinensis orange1.1g018768m.g N 0.843
GSMUA_Achr9G03320_001 Musa acuminata GSMUA_Achr9G03320_001 N 0.839
Lus10025355.g Linum usitatissimum Lus10025355.g N 0.838
GLYMA07G15850 Glycine max GLYMA07G15850 N 0.838
GLYMA18G39771 Glycine max GLYMA18G39771 N 0.838
Ca_21130 Cicer arietinum Ca_21130 N 0.838
MTR_7g061550 Medicago truncatula MTR_7g061550 N 0.838
Pavir.Cb00486 Panicum virgatum Pavir.Cb00486 N 0.837
GSMUA_Achr7G10550_001 Musa acuminata GSMUA_Achr7G10550_001 N 0.835
BRADI4G03970 Brachypodium distachyon BRADI4G03970 N 0.830
GSMUA_Achr5G29070_001 Musa acuminata GSMUA_Achr5G29070_001 N 0.829
OPUNC12G14950 Oryza punctata OPUNC12G14950 N 0.827
LPERR12G13690 Leersia perrieri LPERR12G13690 N 0.827
ORGLA12G0144700 Oryza glaberrima ORGLA12G0144700 N 0.827
ONIVA02G22170 Oryza nivara ONIVA02G22170 N 0.827
OS12G0572000 Oryza sativa OS12G0572000 N 0.827
OMERI08G15890 Oryza meridionalis OMERI08G15890 N 0.827
BGIOSGA037216 Oryza indica BGIOSGA037216 N 0.827
ORUFI12G18280 Oryza rufipogon ORUFI12G18280 N 0.827
OGLUM12G18010 Oryza glumaepatula OGLUM12G18010 N 0.827
OBART12G16450 Oryza barthii OBART12G16450 N 0.827
GSMUA_Achr9G28330_001 Musa acuminata GSMUA_Achr9G28330_001 N 0.826
Traes_5DS_8F3BD4450 Triticum aestivum Traes_5DS_8F3BD4450 N 0.825
Traes_5BS_E635B0A281 Triticum aestivum Traes_5BS_E635B0A281 N 0.825
OB12G23330 Oryza brachyantha OB12G23330 N 0.825
TRIUR3_13997 Triticum urartu TRIUR3_13997 N 0.825
BGIOSGA035973 Oryza indica BGIOSGA035973 N 0.816
AMTR_s00044p00233260 Amborella trichopoda AMTR_s00044p00233260 N 0.815
30167.m000852 Ricinus communis 30167.m000852 N 0.801
TCM_019507 Theobroma cacao TCM_019507 N 0.801
chr3.LjT11G09.160.nc Lotus japonicus chr3.LjT11G09.160.nc N 0.800
mgf026496m Mimulus guttatus mgf026496m N 0.795
Cla007228 Citrullus lanatus Cla007228 N 0.795
Ciclev10011915m.g Citrus clementina Ciclev10011915m.g N 0.777
Cucsa.031620 Cucumis sativus Cucsa.031620 N 0.771
gene10329-v1.0-hybrid Fragaria vesca gene10329-v1.0-hybrid N 0.769
MDP0000252887 Malus domestica MDP0000252887 N 0.763
mgf026281m Mimulus guttatus mgf026281m N 0.762
POPTR_0004s10250 Populus trichocarpa POPTR_0004s10250 N 0.754
VIT_14s0083g00120 Vitis vinifera VIT_14s0083g00120 N 0.754
POPTR_0017s13950 Populus trichocarpa POPTR_0017s13950 N 0.738
PK14097.1 Cannabis sativa PK14097.1 N 0.738
SapurV1A.0101s0440 Salix purpurea SapurV1A.0101s0440 N 0.705
GSMUA_Achr9G19380_001 Musa acuminata GSMUA_Achr9G19380_001 N 0.701