CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb01664
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Eb01664
T289164_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb01664.1.p
Myb
13
60
KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCMLRWLNYL
Pavir.Eb01664.1.p
Myb
66
110
RGCITPAEDAAIRELHASLGNRWSMIAAHLPGRTDNEIKNYWRTR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J35999
Panicum virgatum
Pavir.J35999
I
0.835
Si003965m.g
Setaria italica
Si003965m.g
I
0.800
OMERI01G22060
Oryza meridionalis
OMERI01G22060
I
0.768
OGLUM01G27780
Oryza glumaepatula
OGLUM01G27780
I
0.768
OBART01G24030
Oryza barthii
OBART01G24030
I
0.768
ONIVA01G27030
Oryza nivara
ONIVA01G27030
I
0.768
ORGLA01G0193500
Oryza glaberrima
ORGLA01G0193500
I
0.768
OS01G0637800
Oryza sativa
OS01G0637800
I
0.768
BGIOSGA004072
Oryza indica
BGIOSGA004072
I
0.768
OB01G33330
Oryza brachyantha
OB01G33330
I
0.768
OPUNC01G24010
Oryza punctata
OPUNC01G24010
I
0.768
ORUFI01G26910
Oryza rufipogon
ORUFI01G26910
I
0.768
Pavir.J05460
Panicum virgatum
Pavir.J05460
I
0.759
BRADI2G44770
Brachypodium distachyon
BRADI2G44770
I
0.753
Si003841m.g
Setaria italica
Si003841m.g
I
0.751
Pavir.Eb01665
Panicum virgatum
Pavir.Eb01665
N
0.747
MLOC_5568
Hordeum vulgare
MLOC_5568
I
0.743
GRMZM2G143328
Zea mays
GRMZM2G143328
I
0.740
TRAES3BF026200120CFD_g
Triticum aestivum
TRAES3BF026200120CFD_g
I
0.737
Sb03g029050
Sorghum bicolor
Sb03g029050
I
0.733
LPERR01G20550
Leersia perrieri
LPERR01G20550
I
0.724
TRIUR3_25064
Triticum urartu
TRIUR3_25064
I
0.717
Traes_3DL_429583AEC
Triticum aestivum
Traes_3DL_429583AEC
I
0.707
F775_02242
Aegilops tauschii
F775_02242
I
0.707
Eucgr.J02217
Eucalyptus grandis
Eucgr.J02217
I
0.681
SapurV1A.0571s0200
Salix purpurea
SapurV1A.0571s0200
I
0.673
Si037281m.g
Setaria italica
Si037281m.g
I
0.672
OB03G13340
Oryza brachyantha
OB03G13340
I
0.672
Pavir.Ia04415
Panicum virgatum
Pavir.Ia04415
I
0.672
GRMZM2G054111
Zea mays
GRMZM2G054111
I
0.672
Sb01g047450
Sorghum bicolor
Sb01g047450
I
0.672
ORUFI03G03040
Oryza rufipogon
ORUFI03G03040
I
0.672
ORGLA03G0030900
Oryza glaberrima
ORGLA03G0030900
I
0.672
Pavir.Ib00221
Panicum virgatum
Pavir.Ib00221
I
0.672
OS03G0142600
Oryza sativa
OS03G0142600
I
0.672
BGIOSGA011479
Oryza indica
BGIOSGA011479
I
0.672
MLOC_9927
Hordeum vulgare
MLOC_9927
I
0.672
GSMUA_Achr3G12730_001
Musa acuminata
GSMUA_Achr3G12730_001
I
0.671
Traes_1AL_91299CB97
Triticum aestivum
Traes_1AL_91299CB97
I
0.669
MLOC_68593
Hordeum vulgare
MLOC_68593
I
0.669
POPTR_0001s35200
Populus trichocarpa
POPTR_0001s35200
I
0.669
GSMUA_AchrUn_randomG27010_001
Musa acuminata
GSMUA_AchrUn_randomG27010_001
I
0.668
evm.TU.supercontig_49.71
Carica papaya
evm.TU.supercontig_49.71
I
0.665
Bra033948
Brassica rapa
Bra033948
I
0.662
Bo2g057760
Brassica oleracea
Bo2g057760
I
0.661
orange1.1g021188m.g
Citrus sinensis
orange1.1g021188m.g
I
0.661
Ciclev10015986m.g
Citrus clementina
Ciclev10015986m.g
I
0.661