Pavir.J29846 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J29846 T289444_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.773 0.964
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J29846.1.p Myb 11 57
Pavir.J29846.1.p Myb 63 99

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.790
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.790
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.790
Si017917m.g Setaria italica Si017917m.g I 0.790
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.790
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.781
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.773
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.773
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.773
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.773
OS02G0187700 Oryza sativa OS02G0187700 D 0.773
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.773
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.773
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.773
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.772
OB02G15980 Oryza brachyantha OB02G15980 N 0.769
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.768
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.755
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.755
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.755
Si006938m.g Setaria italica Si006938m.g I 0.755
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.748
LPERR06G18380 Leersia perrieri LPERR06G18380 I 0.740
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.739
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.739
ONIVA06G26080 Oryza nivara ONIVA06G26080 I 0.723
ORUFI06G23790 Oryza rufipogon ORUFI06G23790 I 0.723
BGIOSGA020819 Oryza indica BGIOSGA020819 I 0.723
OS06G0637500 Oryza sativa OS06G0637500 I 0.723
ORGLA06G0184100 Oryza glaberrima ORGLA06G0184100 I 0.723
OGLUM06G23260 Oryza glumaepatula OGLUM06G23260 I 0.723
OMERI06G22090 Oryza meridionalis OMERI06G22090 I 0.723
Traes_7DL_1FA87027B Triticum aestivum Traes_7DL_1FA87027B I 0.715
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.714
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.698
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.695
Si032789m.g Setaria italica Si032789m.g I 0.695
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.695
OPUNC06G19910 Oryza punctata OPUNC06G19910 I 0.693
OS09G0106700 Oryza sativa OS09G0106700 I 0.691
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.691
OBART09G00310 Oryza barthii OBART09G00310 I 0.691
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.691
OB09G10200 Oryza brachyantha OB09G10200 I 0.691
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.691
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.691
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.691
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.691
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.691
MLOC_64963 Hordeum vulgare MLOC_64963 I 0.685
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.683
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.682
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.682
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.682
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.682
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.678
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.673
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.671
29801.m003096 Ricinus communis 29801.m003096 I 0.661