CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo8g077840
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo8g077840
T292463_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC062
M00977_2.00
Arabidopsis thaliana
NTTMCTTAV
BTAAGKAAN
PBM
Lindemose et al.(2014)
NTL6
0.919
0.877
NAC062
M07212_2.00
Arabidopsis thaliana
CTTMNHNNBYAAGNWWHN
NDWWNCTTRVNNDNKAAG
Dap-seq
OMalley et al.(2016)
ANAC062_colamp_a
0.919
0.877
NAC062
M07213_2.00
Arabidopsis thaliana
TNCTTMDBNNBYAAG
CTTRVNNVHKAAGNA
Dap-seq
OMalley et al.(2016)
ANAC062_col
0.919
0.877
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g077840.1
NAC/NAM
17
144
PVGLRFRPTDEELVSFYLQRKINGHDDDVTAIREIDICKWEPWDLPGFSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKIKSAKNSIIGVKRTLVFHSGRAPKGTRTNWIMHEYRA
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra017980
Brassica rapa
Bra017980
I
0.962
Bostr.6864s0295
Boechera stricta
Bostr.6864s0295
I
0.943
ANAC062
Arabidopsis lyrata
scaffold_501948.1
I
0.940
Thhalv10010340m.g
Eutrema salsugineum
Thhalv10010340m.g
I
0.938
Carubv10017199m.g
Capsella rubella
Carubv10017199m.g
I
0.938
Cagra.1838s0033
Capsella grandiflora
Cagra.1838s0033
I
0.938
Bra019599
Brassica rapa
Bra019599
I
0.930
NAC062
Arabidopsis thaliana
AT3G49530
D
0.919
Carubv10000892m.g
Capsella rubella
Carubv10000892m.g
N
0.899
Thhalv10004105m.g
Eutrema salsugineum
Thhalv10004105m.g
N
0.898
Cagra.21346s0001
Capsella grandiflora
Cagra.21346s0001
N
0.898
NAC091
Arabidopsis thaliana
AT5G24590
N
0.898
ANAC091
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6001968
N
0.897
Bo3g109540
Brassica oleracea
Bo3g109540
I
0.894