Carubv10017199m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10017199m.g T297518_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC062
M00977_2.00
Arabidopsis thaliana
NTTMCTTAV

BTAAGKAAN
PBM
Lindemose et al.(2014)
NTL6
0.944 0.947
NAC062
M07212_2.00
Arabidopsis thaliana
CTTMNHNNBYAAGNWWHN

NDWWNCTTRVNNDNKAAG
Dap-seq
OMalley et al.(2016)
ANAC062_colamp_a
0.944 0.947
NAC062
M07213_2.00
Arabidopsis thaliana
TNCTTMDBNNBYAAG

CTTRVNNVHKAAGNA
Dap-seq
OMalley et al.(2016)
ANAC062_col
0.944 0.947
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017199m NAC/NAM 14 141

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1838s0033 Capsella grandiflora Cagra.1838s0033 I 0.964
Bostr.6864s0295 Boechera stricta Bostr.6864s0295 I 0.961
ANAC062 Arabidopsis lyrata scaffold_501948.1 I 0.961
Thhalv10010340m.g Eutrema salsugineum Thhalv10010340m.g I 0.948
NAC062 Arabidopsis thaliana AT3G49530 D 0.944
Bra019599 Brassica rapa Bra019599 I 0.943
Bo8g077840 Brassica oleracea Bo8g077840 I 0.938
Bra017980 Brassica rapa Bra017980 I 0.938
Bo3g109540 Brassica oleracea Bo3g109540 I 0.914
NAC091 Arabidopsis thaliana AT5G24590 N 0.902
Carubv10000892m.g Capsella rubella Carubv10000892m.g N 0.902
Cagra.21346s0001 Capsella grandiflora Cagra.21346s0001 N 0.902
Thhalv10004105m.g Eutrema salsugineum Thhalv10004105m.g N 0.901
ANAC091 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001968 N 0.900
cassava11768.valid.m1 Manihot esculenta cassava11768.valid.m1 N 0.873
Bostr.5763s0059 Boechera stricta Bostr.5763s0059 N 0.871