Cagra.1968s0041 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.1968s0041 T297406_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC004
M07161_2.00 		Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG		 Dap-seq
OMalley et al.(2016)
ANAC004_col_a 		0.923 0.635
NAC004
M07162_2.00 		Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW		 Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a 		0.923 0.635
NAC005
M07163_2.00 		Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW
WWACTTRNDDNRBAAGNWW		 Dap-seq
OMalley et al.(2016)
ANAC005_col_a 		0.904 0.600
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1968s0041.1.p NAC/NAM 13 141

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10009390m.g Capsella rubella Carubv10009390m.g I 0.995
anac048 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000114 I 0.956
anac048 Arabidopsis thaliana AT3G04420 I 0.946
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.944
NAC004 Arabidopsis thaliana AT1G02230 D 0.923
anac005 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000123 I 0.921
Bostr.8819s0187 Boechera stricta Bostr.8819s0187 I 0.917
ANAC004 Arabidopsis lyrata Al_scaffold_0001_137 I 0.916
Bra033303 Brassica rapa Bra033303 I 0.907
NAC005 Arabidopsis thaliana AT1G02250 D 0.904
Bra033308 Brassica rapa Bra033308 I 0.895
Bo5g002950 Brassica oleracea Bo5g002950 I 0.892
Bra033306 Brassica rapa Bra033306 I 0.890