TRE_0001207401 (Trichobilharzia regenti)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 TRE_0001207401 T313003_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.768 0.768
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.768 0.768
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.754 0.754
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.754 0.754
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.754 0.754
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.754 0.754
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.754 0.754
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.754 0.754
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.754 0.754
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.754 0.754
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.739 0.739
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.739 0.739
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.739 0.739
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.739 0.739
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.739 0.739
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.739 0.739
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.739 0.739
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.739 0.739
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.739 0.739
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.739 0.739
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.739 0.739
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.739 0.739
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.739 0.739
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.739 0.739
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.739 0.739
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.739 0.739
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.739 0.739
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.739 0.739
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.739 0.739
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0001207401-mRNA-1 Paired box 1 69

Links

Other Paired box family TFs
Other Trichobilharzia regenti TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sjc_0065980 Schistosoma japonicum Sjc_0065980 I 0.932
AARA001120 Anopheles arabiensis AARA001120 I 0.812
AALB006342 Anopheles albimanus AALB006342 I 0.812
ADAC004542 Anopheles darlingi ADAC004542 I 0.812
D915_05650 Fasciola hepatica D915_05650 N 0.797
D917_02818 Trichinella nativa D917_02818 I 0.783
AMEC016969 Anopheles melas AMEC016969 I 0.768
AFUN011579 Anopheles funestus AFUN011579 I 0.768
ACHR009800 Anopheles christyi ACHR009800 I 0.768
AMEM003247 Anopheles merus AMEM003247 I 0.768
ACUA027429 Anopheles culicifacies ACUA027429 I 0.768
AMIN002123 Anopheles minimus AMIN002123 I 0.768
L889_g28670 Steinernema feltiae L889_g28670 I 0.768
L898_g18055 Steinernema monticolum L898_g18055 I 0.768
AGAP000057 Anopheles gambiae AGAP000057 I 0.768
ASIS021176 Anopheles sinensis ASIS021176 I 0.768
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.768
LLOJ002076 Lutzomyia longipalpis LLOJ002076 I 0.754
AFAF010901 Anopheles farauti AFAF010901 I 0.754
ADIR000964 Anopheles dirus ADIR000964 I 0.754
HelroG124549 Helobdella robusta HelroG124549 I 0.754
MESCA003563 Megaselia scalaris MESCA003563 I 0.754
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.754
GL18401 Drosophila persimilis FBgn0156002 I 0.754
GI14046 Drosophila mojavensis FBgn0136800 I 0.754
GH23966 Drosophila grimshawi FBgn0131423 I 0.754
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.754
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.754
GJ13730 Drosophila virilis FBgn0200951 I 0.754
GK13586 Drosophila willistoni FBgn0215594 I 0.754
SPER_0000498301 Spirometra erinaceieuropaei SPER_0000498301 I 0.753
Pax8 Rattus norvegicus ENSRNOG00000026203 D 0.743
ENSPSIG00000012152 Pelodiscus sinensis ENSPSIG00000012152 I 0.743
SSLN_0001596201 Schistocephalus solidus SSLN_0001596201 I 0.743
AMAM018366 Anopheles maculatus AMAM018366 I 0.742
GM13025 Drosophila sechellia FBgn0167956 I 0.739
Pax5 Mus musculus ENSMUSG00000014030 D 0.739
PTRK_0001603600 Parastrongyloides trichosuri PTRK_0001603600 I 0.739
pax2.L Xenopus laevis XB-GENE-486805 I 0.739
pax2a Danio rerio ENSDARG00000028148 I 0.739
SPAL_0000372000 Strongyloides papillosus SPAL_0000372000 I 0.725
SVE_0227200 Strongyloides venezuelensis SVE_0227200 I 0.725
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.725
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.725
pax8 Tetraodon nigroviridis ENSTNIG00000009029 I 0.725
SSTP_0000522800 Strongyloides stercoralis SSTP_0000522800 I 0.725
TTAC_0001098501 Hydatigera taeniaeformis TTAC_0001098501 I 0.724
DILT_0001709501 Diphyllobothrium latum DILT_0001709501 I 0.724
AATE007772 Anopheles atroparvus AATE007772 I 0.719
PAX5 Homo sapiens ENSG00000196092 D 0.719
pax8 Xenopus tropicalis XB-GENE-483693 I 0.719
PAX8 Equus caballus ENSECAG00000009244 I 0.718
TELCIR_18859 Teladorsagia circumcincta TELCIR_18859 I 0.712
TELCIR_10899 Teladorsagia circumcincta TELCIR_10899 I 0.710
ENSSARG00000014324 Sorex araneus ENSSARG00000014324 I 0.710
DICVIV_04707 Dictyocaulus viviparus DICVIV_04707 I 0.710
HCOI01205400 Haemonchus contortus HCOI01205400 I 0.710