CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sjc_0065980
(
Schistosoma japonicum
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
Sjc_0065980
T312250_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
egl-38
M02426_2.00
Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT
PBM
Weirauch et al.(2014)
pTH8981
0.740
0.740
pax-2
M00706_2.00
Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY
PBM
Narasimhan et al.(2015)
pTH10794
0.740
0.740
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.726
0.726
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.726
0.726
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.726
0.726
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.726
0.726
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.726
0.726
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.726
0.726
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.726
0.726
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.726
0.726
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.712
0.712
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.712
0.712
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.712
0.712
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.712
0.712
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.712
0.712
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.712
0.712
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.712
0.712
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.712
0.712
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.712
0.712
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.712
0.712
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.712
0.712
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.712
0.712
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.712
0.712
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.712
0.712
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.712
0.712
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.712
0.712
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.712
0.712
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.712
0.712
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.712
0.712
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000006202
Paired box
1
73
MYLCYYETGSIRPGVIGGSKPKVATASVVEAICKYKEDNPTMFAWEIRDRLLKDQICTVENVPSVSSINRIVR
Links
Other
Paired box
family TFs
Other
Schistosoma japonicum
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TRE_0001207401
Trichobilharzia regenti
TRE_0001207401
I
0.932
D915_05650
Fasciola hepatica
D915_05650
N
0.877
AARA001120
Anopheles arabiensis
AARA001120
I
0.812
AALB006342
Anopheles albimanus
AALB006342
I
0.812
ADAC004542
Anopheles darlingi
ADAC004542
I
0.812
D917_02818
Trichinella nativa
D917_02818
I
0.797
SPER_0000498301
Spirometra erinaceieuropaei
SPER_0000498301
I
0.767
ENSPSIG00000012152
Pelodiscus sinensis
ENSPSIG00000012152
I
0.757
Pax8
Rattus norvegicus
ENSRNOG00000026203
D
0.757
SSLN_0001596201
Schistocephalus solidus
SSLN_0001596201
I
0.757
tetur29g01000
Tetranychus urticae
tetur29g01000
I
0.753
LotgiG135549
Lottia gigantea
LotgiG135549
I
0.753
L892_g26455
Steinernema scapterisci
L892_g26455
I
0.753
pax2/5/8-b
Ciona intestinalis
ENSCING00000005977
I
0.753
AMAM018366
Anopheles maculatus
AMAM018366
I
0.742
ACUA027429
Anopheles culicifacies
ACUA027429
I
0.740
ACHR009800
Anopheles christyi
ACHR009800
I
0.740
AFUN011579
Anopheles funestus
AFUN011579
I
0.740
ASTEI06196
Anopheles stephensi
ASTEI06196
I
0.740
L889_g28670
Steinernema feltiae
L889_g28670
I
0.740
L898_g18055
Steinernema monticolum
L898_g18055
I
0.740
L596_g7168
Steinernema carpocapsae
L596_g7168
I
0.740
ASIS021176
Anopheles sinensis
ASIS021176
I
0.740
AMEM003247
Anopheles merus
AMEM003247
I
0.740
AMIN002123
Anopheles minimus
AMIN002123
I
0.740
AMEC016969
Anopheles melas
AMEC016969
I
0.740
pax-2
Caenorhabditis elegans
WBGene00003938
D
0.740
GF20618
Drosophila ananassae
FBgn0097624
I
0.740
AGAP000057
Anopheles gambiae
AGAP000057
I
0.740
DILT_0001709501
Diphyllobothrium latum
DILT_0001709501
I
0.737
TTAC_0001098501
Hydatigera taeniaeformis
TTAC_0001098501
I
0.737
nDi.2.2.2.g01404
Dirofilaria immitis
nDi.2.2.2.g01404
I
0.726
Pax8
Dipodomys ordii
ENSDORG00000002606
I
0.726
nLs.2.1.2.g05197
Litomosoides sigmodontis
nLs.2.1.2.g05197
I
0.726
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.726
AFAF010901
Anopheles farauti
AFAF010901
I
0.726
LLOJ002076
Lutzomyia longipalpis
LLOJ002076
I
0.726
EEL_0001009001
Elaeophora elaphi
EEL_0001009001
I
0.726
ALUE_0001419501
Ascaris lumbricoides
ALUE_0001419501
I
0.726
GH23966
Drosophila grimshawi
FBgn0131423
I
0.726
ASU_03705
Ascaris suum
ASU_03705
I
0.726
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.726
ADIR000964
Anopheles dirus
ADIR000964
I
0.726
SMUV_0000412301
Syphacia muris
SMUV_0000412301
I
0.726
GK13586
Drosophila willistoni
FBgn0215594
I
0.726
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
0.726
GJ13730
Drosophila virilis
FBgn0200951
I
0.726
GL18401
Drosophila persimilis
FBgn0156002
I
0.726
GI14046
Drosophila mojavensis
FBgn0136800
I
0.726
HelroG124549
Helobdella robusta
HelroG124549
I
0.726
LOAG_00159
Loa loa
LOAG_00159
I
0.726
MESCA003563
Megaselia scalaris
MESCA003563
I
0.726
Bm1956
Brugia malayi
Bm1956
I
0.726
PAX5
Homo sapiens
ENSG00000196092
D
0.719
AATE007772
Anopheles atroparvus
AATE007772
I
0.719
pax8
Xenopus tropicalis
XB-GENE-483693
I
0.719
PTRK_0001603600
Parastrongyloides trichosuri
PTRK_0001603600
I
0.712
RSKR_0000585500
Rhabditophanes kr3021
RSKR_0000585500
I
0.712
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.712
ENSAMXG00000009227
Astyanax mexicanus
ENSAMXG00000009227
I
0.712
pax8
Danio rerio
ENSDARG00000015879
I
0.712
pax2a
Danio rerio
ENSDARG00000028148
I
0.712
pax2b
Danio rerio
ENSDARG00000032578
D
0.712
ENSONIG00000000205
Oreochromis niloticus
ENSONIG00000000205
I
0.712
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.712
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.712
PAX2
Homo sapiens
ENSG00000075891
D
0.712
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.712
GM13025
Drosophila sechellia
FBgn0167956
I
0.712
PAX8
Equus caballus
ENSECAG00000009244
I
0.712
ENSPFOG00000019830
Poecilia formosa
ENSPFOG00000019830
I
0.712
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.712
pax8
Oryzias latipes
ENSORLG00000007225
I
0.712
Pax5
Mus musculus
ENSMUSG00000014030
D
0.712
BGLB002026
Biomphalaria glabrata
BGLB002026
N
0.712
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.712
HHAL006987-PA
Halyomorpha halys
HHAL006987-PA
I
0.708
CLEC006620
Cimex lectularius
CLEC006620
I
0.708
ENSOANG00000029256
Ornithorhynchus anatinus
ENSOANG00000029256
I
0.704