Aan_R005833 (Calypte anna)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 Aan_R005833 T322116_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN

NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.994 0.987
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN

NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.994 0.987
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN

NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.994 0.987
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM

KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.994 0.987
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN

NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.994 0.987
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN

NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.994 0.973
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN

NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.994 0.973
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN

NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.992 0.947
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY

RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.992 0.933
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH

DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.988 0.760
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN

NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.988 0.760
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN

NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.986 0.733
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM

KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.986 0.733
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW

WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.986 0.733
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA

TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.986 0.733
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM

KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.986 0.733
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV

BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.986 0.733
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV

BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.986 0.733
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN

NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.962 0.640
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aan_R005833 SAND 80 155

Links

Other SAND family TFs
Other Calypte anna TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_19511 Aegilops tauschii F775_19511 I 0.000
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.000
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.000
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.000
Bostr.25463s0081 Boechera stricta Bostr.25463s0081 I 0.000
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.000
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.000
Ca_11494 Cicer arietinum Ca_11494 I 0.000
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I 0.000
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I 0.000
MLOC_6696 Hordeum vulgare MLOC_6696 I 0.000
Lus10011031.g Linum usitatissimum Lus10011031.g N 0.000
Lus10040139.g Linum usitatissimum Lus10040139.g I 0.000
Lus10001093.g Linum usitatissimum Lus10001093.g I 0.000
MTR_5g029840 Medicago truncatula MTR_5g029840 I 0.000
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I 0.000
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I 0.000
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.000
Pavir.Da02398 Panicum virgatum Pavir.Da02398 I 0.000
gw1.433.32.1 Physcomitrella patens gw1.433.32.1 I 0.000
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I 0.000
POPTR_0003s09300 Populus trichocarpa POPTR_0003s09300 I 0.000
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I 0.000
Traes_5DL_0B2C5ADF6 Triticum aestivum Traes_5DL_0B2C5ADF6 I 0.000
Traes_5BL_30D8E6BE2 Triticum aestivum Traes_5BL_30D8E6BE2 I 0.000