cassava35219.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava35219.m1 T324092_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35219.m1 Sigma 70 324 394

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30078.m002307 Ricinus communis 30078.m002307 N 0.930
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.901
Pm030137 Prunus mume Pm030137 N 0.901
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.873
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.873
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.859
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.859
TCM_022198 Theobroma cacao TCM_022198 N 0.845
Cla018594 Citrullus lanatus Cla018594 N 0.845
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.845
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.845
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.831
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.831
SIGF Vitis vinifera VIT_08s0040g01560 N 0.831
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.831
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.831
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.817
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.817
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.817
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.804
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.803
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.803
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.803
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.803
Ca_12052 Cicer arietinum Ca_12052 N 0.803
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.803
Bo4g186560 Brassica oleracea Bo4g186560 N 0.803
SIGF Arabidopsis thaliana AT2G36990 N 0.803
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.803
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.803
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.803
Bra017213 Brassica rapa Bra017213 N 0.789
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.789
mgf007606m Mimulus guttatus mgf007606m N 0.789
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.746
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.732
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.732
Ca_17153 Cicer arietinum Ca_17153 N 0.732
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.704
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.703