Cla018594 (Citrullus lanatus)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Cla018594 T324057_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018594 Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Citrullus lanatus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.915
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.915
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.915
30078.m002307 Ricinus communis 30078.m002307 N 0.901
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.887
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.887
Pm030137 Prunus mume Pm030137 N 0.887
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.887
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.887
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.873
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.873
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.873
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.859
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.859
SIGF Vitis vinifera VIT_08s0040g01560 N 0.859
TCM_022198 Theobroma cacao TCM_022198 N 0.859
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.845
Bo4g186560 Brassica oleracea Bo4g186560 N 0.845
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.845
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.845
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.845
SIGF Arabidopsis thaliana AT2G36990 N 0.845
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.845
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.845
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.831
Bra017213 Brassica rapa Bra017213 N 0.831
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.831
Ca_12052 Cicer arietinum Ca_12052 N 0.817
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.817
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.817
mgf007606m Mimulus guttatus mgf007606m N 0.817
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.811
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.803
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.803
Ca_17153 Cicer arietinum Ca_17153 N 0.789
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.789
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.775
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.761
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.761
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.746
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.746
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.704
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.704